Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01918 ATGGCTATGGCTGTGGTTCAACACAGGGAGAGTAGCAGCAGTGGGAGCATTGACAAACACCTAGATGCTGGCAAGTATGTGAGGTATACTGCTGAGCAAGTCGAGGCTCTTGAAAGGGTCTATGCTGAATGCCCTAAGCCTAGTTCTCTCAGGAGACAACAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGAAGGTGTAGGGAGAAGCAGAGAAAGGAGGCTTCTCGGCTTCAGACTGTGAACCGCAAACTCACTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTGCAGAAGCAGGTGTCACAGCTGGTGTGTGAGAATGGGTATATGAGGCAGCAGTTGCATACTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCTCAGCATACCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTCAGTTTAGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAGTGGAGGAACCATTGAACTTGTTTACACACAGACATATGCCCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACACTGAGATATACCACAAGTTTGGAAAATGGCAGTCTTGTGGTCTGTGAAAGGTCCCTGTCTGGTTCTGGCTCGGGCCCTAATCCAGCAGCTGCTGCTCAGTTTGTAAGGGCTGAAACGCTCCCTAGTGGCTACTTGATTCGACCATGTGAGGGTGGAGGATCAATCATTCACATAGTAGACCACCTAAATCTTGAGGCATGGAGCGTCCCTGAAGTGTTAAGGCCACTTTATGAATCATCAAAGGTGGTGGCTCAAAAGATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACGAGTGGTGAAGTGGTTTATGGGTTGGGCAGGCAGCCTGCTGTCCTACGAACTTTCAGCCAGAGATTAAGCAGAGGCTTTAATGATGCTGTAAATGGATTCAATGATGATGGATGGACTGTATTGAACTGTGATGGTGCGGAGGATGTAATTATTGCAGTTAATTCTACGAAGAATTTGAGTGGAACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTTCAAAATGTCCCCCCTGCACTTTTGGTTCGTTTTCTCAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGAACCTATGCATATCCAGGAATGAGGCCAACAAGATTCACTGGCAGTCAAATAATAATGCCTCTTGGTCATACTATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTCGTATTTGCTCCAATAGATGAAATGTTCCCTGATGATGCTCCTTTAGTTCCTTCTGGCTTCCGCATTATTCCACTAGATTCGAAACCAGTTGAGTATTATGGTGACAAAAAGGATATAGTTGCTTCAAATCGGACCTTGGATTTGACTTCAGGTTTTGAAGTAGGCCCAGCAACAACAACTGGTGCAGATGCATCATCAAGTCAGAACACTCGTTCTGTGTTGACTATTGCCTTCCAGTTCCCGTTTGACAGCAGTTTGCAAGATAATGTTGCAGTCATGGCACGACAATATGTCCGCAGCGTGATTTCCTCGGTGCAGAGGGTTGCCATGGCTATATCTCCCTCAGGAATAAGCCCAGCTGTTGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCTGTTACGCTGGCTCACTGGATCTGCCAAAGTTATAGGCAAGTATTATATTACTATTTAGGGTCTGATTTACTGAGATCAGATTCTCTTGTTGGTGACACGATGCTGAAACACCTGTGGCATCATCAGGATGCTATTCTATGCTGTTCACTGAAGACATTACCAGTGTTCATATTTGCAAATCAAGCAGGCCTTGACATGTTGGAAACAACTCTAGTGGCCTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTGTACAGACTTTGCCAAGTTAATGGAGCAGGGTTTTGCATATCTGCCAGCTGGAATCTGCATGTCGACGATGGGGCGGCATGTATCCTATGATCAAGCCATTGCATGGAAAGTACTCACCGGAGAAGACAACACTGTTCACTGTTTGGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2553 0.4602 MAMAVVQHRESSSSGSIDKHLDAGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTTSAATTDASCDSVVTTPQHTMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGSGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGSGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLVPSGFRIIPLDSKPVEYYGDKKDIVASNRTLDLTSGFEVGPATTTGADASSSQNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGISPAVGAKLSPGSPEAVTLAHWICQSYRQVLYYYLGSDLLRSDSLVGDTMLKHLWHHQDAILCCSLKTLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCTDFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNTVHCLAFSFINWSFV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01918 850 Gene3D - 18 91 - -
Vimu5g01918 850 Gene3D - 198 380 IPR023393 -
Vimu5g01918 850 SMART START_1 163 373 IPR002913 GO:0008289
Vimu5g01918 850 CDD START_ArGLABRA2_like 158 374 - -
Vimu5g01918 850 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Vimu5g01918 850 Pfam START domain 164 371 IPR002913 GO:0008289
Vimu5g01918 850 SUPERFAMILY Homeodomain-like 25 87 IPR009057 -
Vimu5g01918 850 SMART HOX_1 22 88 IPR001356 GO:0003677
Vimu5g01918 850 Coils Coil 94 121 - -
Vimu5g01918 850 CDD homeodomain 25 85 IPR001356 GO:0003677
Vimu5g01918 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 21 850 IPR044830 GO:0003700
Vimu5g01918 850 SUPERFAMILY Bet v1-like 163 375 - -
Vimu5g01918 850 CDD bZIP 77 116 - -
Vimu5g01918 850 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Vimu5g01918 850 Pfam MEKHLA domain 702 849 IPR013978 -
Vimu5g01918 850 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Vimu5g01918 850 Pfam Homeodomain 25 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01918 Vimu-Chr5 31096485 31101901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01918 1 850 Homeobox Transcription Factor Family AT5G60690 81.330 0.0 1443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu5g01918 START 1.7e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01918 K09338 - gmx:100804870 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01918 5 31096485 31101901 Vimu5g01918 5 31096485 31101901 ECH