Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01915 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTTAGTCTGGTTCCTCTCAGAAACTCGGAACTCGGTCCCGACCCGGAGGGGGGTGCTGACGTGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTCGCGAAGACTCTGACGCAATCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCGCGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGAGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGTGGGAATTTGAGTGGCAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCAGTGACACTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCTCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATCAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCAGCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCACCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACAAGCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTTACCGAACAACAGATTTCTAGAGATGTGTTGTCCCGTGGGAAAAAATCAGCGGATGATGTCAAAGACAAGGAGAAGTGCTTTCTGGATGACTCCCAATCTGCACTCTTTTCATCAGGAAAAGCTTCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTATGAAGAACTCTATAGAAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAAAAAACTGGAGAAGAACCTTTCAGCGAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGAACTCGGAATGGTGAACATGGACTGGATGCATCAAATAAAGCAGGCCCTCTGA 2040 0.4941 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGPDPEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGNLSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQQPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIHQHGLYSGISSGNTSNHDKSKESLSHLLTIGKSSKTLEKSDDVKKHQFLLFGQPILTEQQISRDVLSRGKKSADDVKDKEKCFLDDSQSALFSSGKASSAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKKTGEEPFSEKVDNSDGFRQQKCYKELGMVNMDWMHQIKQAL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01915 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu5g01915 679 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Vimu5g01915 679 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Vimu5g01915 679 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Vimu5g01915 679 Gene3D - 103 207 IPR015300 -
Vimu5g01915 679 Gene3D - 581 660 - -
Vimu5g01915 679 FunFam Auxin response factor 103 207 - -
Vimu5g01915 679 CDD B3_DNA 104 205 IPR003340 GO:0003677
Vimu5g01915 679 SMART B3_2 105 207 IPR003340 GO:0003677
Vimu5g01915 679 FunFam Auxin response factor 314 387 - -
Vimu5g01915 679 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu5g01915 679 Gene3D - 314 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01915 Vimu-Chr5 31053838 31056593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01915 3 647 B3 DNA Binding Superfamily AT2G28350 57.331 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu5g01915 B3 1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01915 - - gmx:100814686 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00637 4 4789323 4792076 Vimu5g01915 5 31053838 31056593 PCT