Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01913 ATGAAGGAGTGGTTGTTTTTTGACAAGAATTTTAATGGTTTGTCGGACGACATACTCGATGATGTCATGGATATGGAGCTTTTCGATTTCTCCCTTGAAGACGTGGAAACTGATGATGGTGCGGAAGAAGATTGGAATGCGCAGTTCAAATTCCTTGAAGAGCCTTCACTAGGAATTTTTCCTGTACAACCGTCTCAGCTCTGTGCTCATACTCAAAATGAGAATGTGAAAGTCGAAACGAGTTTCTCTGATTCTACAGCGAAGACGGCAGGTCCTAAATATAGGAAAAATGTTCCTATCCAGAAAGTCTCTTTCACTGCAAAAGATTTGCAGCAATTCCAAACTAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTAGTAGTTCTCCTTGGGTTGAGAACTGTAACTTGGAGTTAGCTGTTATTGGAAGAAAACGTCCCCGAAGCAAACGCAGGGCTCTCTCAAACATGACCCTGCTATACTCCATTCCTTTCATCTTTAGTTCATCAGAGGAATCAGTAGGTATAAGAAAATGCATGCACTGTGAGGTGAGAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAACGCTTGTGGAGTTCGGTACCGCTCTGGCAGGCTCTTTGCTGAATACCGTCCTGCAGCTAGCCCCACTTTTGTGCCATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGAAACAGAGCCACCCATGTCACTGTTAGATAA 753 0.4356 MKEWLFFDKNFNGLSDDILDDVMDMELFDFSLEDVETDDGAEEDWNAQFKFLEEPSLGIFPVQPSQLCAHTQNENVKVETSFSDSTAKTAGPKYRKNVPIQKVSFTAKDLQQFQTNSPVSVFESSSSSSPWVENCNLELAVIGRKRPRSKRRALSNMTLLYSIPFIFSSSEESVGIRKCMHCEVRKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVPSLHSNSHKKVLEIRNRATHVTVR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01913 250 SMART GATA_3 173 223 IPR000679 GO:0006355|GO:0043565
Vimu5g01913 250 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Vimu5g01913 250 Gene3D - 176 223 IPR013088 GO:0006355|GO:0008270
Vimu5g01913 250 ProSiteProfiles GATA-type zinc finger domain profile. 177 209 IPR000679 GO:0006355|GO:0043565
Vimu5g01913 250 CDD ZnF_GATA 178 225 IPR000679 GO:0006355|GO:0043565
Vimu5g01913 250 FunFam GATA transcription factor 169 250 - -
Vimu5g01913 250 PANTHER GATA TRANSCRIPTION FACTOR 100 244 - -
Vimu5g01913 250 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Vimu5g01913 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01913 Vimu-Chr5 31021291 31024604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01913 8 243 C2C2-Gata Transcription Factor Family AT1G08010 37.543 5.07e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu5g01913 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01913 - - gmx:100781869 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00639 4 4799162 4802559 Vimu5g01913 5 31021291 31024604 PCT