Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01904 ATGGTACTGAGGGAGAATAACCTTGACTCTGATGTTTTGTTGGCAAACCCAGCATTTGTTCCTTCCTACCCTCGTTACCTTCATTGCATACATTGCTGTGAAATTAGGTCAGGAAACGAGATTTTATATCCCCTTATTGAGAATGAAATGATTGACATCCGTTTCCTTGCTGTAGCACAGGGTGGATCACTTTTCCATTTTGCTTCCACAGATGCAGATTGGACTCAGAATATTAGAAGACTAAGCCTGTTCTTAATGCTGGGAATCGGAGCTTCTCTCTGGGTAATTGTTCTAAGTCATGTGATTGCCACTCAGATGCTAAAGAAAGTGCATCCGTATGGAAATGCATATGCGATTCAAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGCCCTAATTGTTTTAAAGCTTGCAACTGCACCTGGGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTACCATGGAAATATTTTTCCATTTTCCTTAGCTGAACTGGAAAATGCCACTGAAAACTTTTCATCGTCCAACCTGATTGGACTAGGCGGAAGCAGTTATGTATACCATGGTCGGCTGAAAGATGGTAGCGATGTGGCGGTTAAACGACTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGGTTGTTCCTAATGATGCAATATTAATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATACTGTTCAGAGTTAAAAGGAAAACATGTTCAGAGGTTACTTGTATTTGACTACATGGCTAATGGAAATTTGAGGGACTGTTTAGATGGCATTTCTGGAAAACATATAGATTGGGCTACTCGTGTGATGATTGCGTTAGGAGCTGCAAAGGGCTTGGAGTATCTCCATGAAGCAGCAGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACCTGAGATCTGATGACCTCCCTAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGTACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTTAGTTTTGGTGTGGTTCTTCTTGAGCTTATCAGTGGGCGGCAGCCCATCCATAAATCAACTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTACAGGATAGTAGGCGAGTAATAACGGAGCTGGTTGATCCACAATTAAAAGGAAATTTTCCAGAAGAAGAGGTGCAGGTGATGGCATACTTAGCAAAGGAGTGTTTGCTGCTAGATCCTGACACTCGACCAACCATGAGTGAGGTTGTTCAGATTCTTTTAAGTATTTCACCAGGAAAATCTAGGAGGAGAAGAAACATTACAGGCAGCCTCTTTCAGGTTAATCCTGTTTTAATTTCTACTTGTAATCTTTCTAGTTTCAGGTTTCTTAGTTTTCAAAGTTTTGATGTATACTTTGGTTATCCGGTTTTTACATTTGCTGGTATCATAGATCATTCTGAAGTGGCATGTAAAATGAAAAATAAACCATATCCTGATATTTTCTTTCTTGATGGACTTGTAAAGGAACCGCAGGATGAAGAAAATCAAAGGCAAGCCACACCCAGTAAATTTCCAACGCATAGTTCACTGCCAATATATCTTGATCATAATCATTCTGTTAAGAACAAAAGTAAAGAAGCAGATCCAGTTTCAGCTGAGTATATGGAGAGTTTGATCATCTTGGCTTCAAAATCTGATGGCTCTTGTGTATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTAGGTTTGAGTCCTTTTGCATCACCTCTGGCAAAGCCCCTTGA 1893 0.4062 MVLRENNLDSDVLLANPAFVPSYPRYLHCIHCCEIRSGNEILYPLIENEMIDIRFLAVAQGGSLFHFASTDADWTQNIRRLSLFLMLGIGASLWVIVLSHVIATQMLKKVHPYGNAYAIQMGFPKWQQMVIALIVLKLATAPGKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGLGGSSYVYHGRLKDGSDVAVKRLKDQGGPEADSAFFKEVVPNDAILIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGISGKHIDWATRVMIALGAAKGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWATPRLQDSRRVITELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILLSISPGKSRRRRNITGSLFQVNPVLISTCNLSSFRFLSFQSFDVYFGYPVFTFAGIIDHSEVACKMKNKPYPDIFFLDGLVKEPQDEENQRQATPSKFPTHSSLPIYLDHNHSVKNKSKEADPVSAEYMESLIILASKSDGSCVSEEEMVDLTEPRFESFCITSGKAP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01904 630 Gene3D Phosphorylase Kinase; domain 1 150 263 - -
Vimu5g01904 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vimu5g01904 630 FunFam receptor-like serine/threonine-protein kinase NCRK 149 263 - -
Vimu5g01904 630 CDD STKc_IRAK 181 465 - -
Vimu5g01904 630 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Vimu5g01904 630 ProSiteProfiles Protein kinase domain profile. 175 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01904 630 SUPERFAMILY Protein kinase-like (PK-like) 155 462 IPR011009 -
Vimu5g01904 630 SMART serkin_6 175 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01904 630 Gene3D Transferase(Phosphotransferase) domain 1 264 480 - -
Vimu5g01904 630 FunFam receptor-like serine/threonine-protein kinase NCRK 264 474 - -
Vimu5g01904 630 PANTHER OS01G0750732 PROTEIN 118 467 - -
Vimu5g01904 630 Pfam Protein kinase domain 177 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01904 Vimu-Chr5 30913615 30918364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01904 145 484 Receptor kinase-like Gene Family AT2G28250 66.279 2.69e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vimu5g01904 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01904 - - gsj:114380299 652.129