Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01891 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCACCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTACTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTGCTTCGAATCCTTTGTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCACGCCACTTGGGAGCTAATTGGATGGTGAATTACAACGAAAGCAACCCCAACACCAACAATACCACCTTCTTCTCTTCTGAGCTTAATAACAATGCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTCGGTGAAATGCATTACCCTCCTTCTTCTTCTTCTTCGCCTCCTCTTTACCATAATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCGCGATGGGTTTCAAGAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTATCACTGTCACTTTCCTCGAATTCACAATCTAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACTCAATATTCAAAGTCATTGAAGTCCTCCATGAAGTTGAACGTTCTTTCAAACAATACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCGAGATTCTTGAAGCCATGTCAACAGCTGTTGGATGGGTGGTGCTGTCAATACGGTTCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTCCAGGGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTATTTCTGCAGCTGCAACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGGGGGTGCTGCAAAAGGTGTTAGCTATCTGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACTAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGATGCTTAAAAAGTGCTATCTCTGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGAATTTTCAATGCCAACCACAAGTAATGGTGGTAAATTTGACAGTAACATGGCAAGGCTAAGGTGCATAGATCAAAGTTTTCAGAAAAACAAATCTTTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCAGTTGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTATGTCTTCTCTCTGACCTCTCATGTGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAACCCCACCAAGCCTCTAATAAAAGTGACCAGGTAGCTTCTGCATCTGAAGGTAGCAACCGGCCCAAATCAGATCACCAACCTGTGAGCAGGTATGGCACGCATGCATCATCACATGCAATCCCTGACAAGCAGTTTCAGTGTTTGGAAATGGGTTCATCATCCTCAGCAGGCAATGAGGAACACATTGGGATGAATGAAGACCAATGGAATCAAGAGAAGAGATCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGATGGGACAGTGATGGGGTTTATGCCCTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGTTCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAGCAAGAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2271 0.45 MSSLRPELHVAQQLRRDKLRIQNSSHQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPRHLGANWMVNYNESNPNTNNTTFFSSELNNNASGEIANREIQKQFGEMHYPPSSSSSPPLYHNALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSSAMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDGWCCQYGSKSAKGGGCDVPGWVSRDVSAASISAAATAGDALNVDESGGAAKGVSYLGASSSVLYSSNENDNTNSADGGATSNFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKSAISDQLKLTCEVLGEEFSMPTTSNGGKFDSNMARLRCIDQSFQKNKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYVFSLTSHVYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEPHQASNKSDQVASASEGSNRPKSDHQPVSRYGTHASSHAIPDKQFQCLEMGSSSSAGNEEHIGMNEDQWNQEKRSKLECQIAATPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEELRRQFGGHMIHDFVG 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01891 756 MobiDBLite consensus disorder prediction 607 641 - -
Vimu5g01891 756 Gene3D - 527 598 - -
Vimu5g01891 756 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 171 617 - -
Vimu5g01891 756 MobiDBLite consensus disorder prediction 223 261 - -
Vimu5g01891 756 Pfam Homeobox KN domain 557 589 IPR008422 GO:0003677|GO:0006355
Vimu5g01891 756 SUPERFAMILY Homeodomain-like 527 599 IPR009057 -
Vimu5g01891 756 SMART prehox3 290 466 IPR006563 -
Vimu5g01891 756 Pfam Associated with HOX 295 465 IPR006563 -
Vimu5g01891 756 CDD homeodomain 524 594 IPR001356 GO:0003677
Vimu5g01891 756 ProSiteProfiles 'Homeobox' domain profile. 552 593 IPR001356 GO:0003677
Vimu5g01891 756 SMART HOX_1 524 597 IPR001356 GO:0003677
Vimu5g01891 756 MobiDBLite consensus disorder prediction 603 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01891 Vimu-Chr5 30766564 30772368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01891 379 602 Homeobox Transcription Factor Family AT4G34610 50.446 8.59e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu5g01891 POX 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01891 - - vum:124831694 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00658 4 5049792 5056328 Vimu5g01891 5 30766564 30772368 PCT