Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01887 ATGGCTTCTACAACCCCAGTTCCTGTTAAAGCCCTACCACCTCTAAGGGCAAAGAAAGATCGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTTTGCCACCTTTGTGTGCTGCTCGCATCTTCCAACTCACTCGTGAGCTAGGTTACAAGACTCACGGAGAAACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGCACTGGTATATCACCTTTCATCGTTGAATTAACGTCATCGTCGTCATCACCATCACCACCGTCTTCTTCCTCACTACCCATACTTCCACTACCTTCTCAGGACAACAACGTTGTTGTTGCTCAACATGCAAATTTGGCACACGTGTCAATAGACAATGAGATCAATTCTAAAGAGACATTTCTACCATTGGATTTTGATGTGTTTTCAAACTTTAATGTCGAGTTTTCTGCTGCTGAGATCGAAATGCTCCAATCATTGATGACCAGTGAAGGAGAAGAAGAAGCTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGATGCCCTTCAGATATTAGCCCAAGATGTATATGGTGGCATGGCCAATTATACAACTGTGTTCAAGAAAGTAATAAAACAACAGTTGGGTTATTGCGTAGTTGATGTGGACGCTGATTGGAATGGGGCATTCAATTTCAGCAAAGATCTTACCTTTTTGACCATCTGTGCCCAGCAAATGAAAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACTAGCTTATGGCCAAAGTTTTGGTGGTGGGAAGTCAAGATCCATCGTCTTGAAGCCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGTAAAGCTAATCAGAAAGTAGACATTGACAGTACCAAGAAAGATATTCCTATTAGATCTGTAGATTGCCTACCTTGTTGTGAAGGGTTCTTTTGCCCTCGTGGTCTCACTTGCATGATACCTTGCCCATTGGGGTCTTATTGTCCTCTTGGAAACCTCAATAAGACTAGTGGAGTATGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATCTGGGCAGATATTCAGAGTAGCAGTGAGGCTGGCTTGTGTTTTATGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAGTACAAGAGAGAGGGCTGTTCAAAGTGTGAGAGAAACCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTGGGACTACAATCGCAACTATCACGTACATTTTCACGCAAAACTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGAGTCTGCTATTCCACCTACTGGTAAAGGCAAGAAAAAGGATAAAAACAATCTCTCAAAAATACTAAATGATATTGAGCAAAACCCCGATAATCCAGAGGGGTTTAATGTTGAGATAGGAGATAAAAATGTGAAAAAGCAAGCACCAAGGGGCAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATCAGGAAGAGACCTACTATTGAAGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTAACCGGTAAACTATATCCTGGTAGAGTTTCAGCTGTCATGGGCCCATCCGGGGCTGGCAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACGACTGGGCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCTAGATGCAGACTCCCTGCTGATCTACCGAAAGAAGAAAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTCGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTAATTTTGGATGAACCTACATCTGGTTTGGATAGCTCATCTTCTCAATTGCTTCTAAGAGCACTTAGACGTGAAGCTCTTGAAGGTGTGAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGCATCAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTACCTGTGAGATGGATGCTTCACAATGGGTACCCCGTGCCCATGGATATGCTACAGAGTGTTGAAGGAATGTCCGCCCCAAGTGGTGAAGGCTCATCAAGTGGAGCAGCAGCTGGTGGAGAAGAAGAAGCACCCTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCACATGATCTGTCCAATCGGGTTACACCAGGAGTGTTCAACCAATACAAGTACTTTCTTGGAAGAGTGGGTAAGCAAAGACTAAGAGAAGCTAGAACACAGGCTGTAGATTTCTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGTACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGCACTCCTTTCTAAGATTGCGGCTTTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGTTCTTCAGGCATGAGCAGTTTGGCTTACTTTCTATCAAAGGATACTGTTGACCATTTTAGCACAATTATCAAGCCACTAGTTTACCTTTCCATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCGTAGATAACTACATTGTTCTACTATGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTCTTACAGCCAGGTCCAGCCCAACTGTGGTCAGCTTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATCAAAACGAAGATGATAGCAAATATGTTAAATATCTGTCAGATTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCTCTTTATTCTTCTGGGTATGATCTTAAACATTGGTATCAATGTTTAGGCCTTCTTATCGTGATGGGAATAATTAGTCGCATGCTGGCATTCTTCTGCATGATAACCTTCCAAAAGAAATAA 3507 0.4169 MASTTPVPVKALPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPFIVELTSSSSSPSPPSSSSLPILPLPSQDNNVVVAQHANLAHVSIDNEINSKETFLPLDFDVFSNFNVEFSAAEIEMLQSLMTSEGEEEAGGGGGGGGGGGDALQILAQDVYGGMANYTTVFKKVIKQQLGYCVVDVDADWNGAFNFSKDLTFLTICAQQMKGDITQRMCTEAEILAYGQSFGGGKSRSIVLKPNINCNLSSWVNGCEPGWGCKANQKVDIDSTKKDIPIRSVDCLPCCEGFFCPRGLTCMIPCPLGSYCPLGNLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSSEAGLCFMLIIIYNCSDQVLATRERRQASTRERAVQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPELKGFGSKHSESAIPPTGKGKKKDKNNLSKILNDIEQNPDNPEGFNVEIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMSAPSGEGSSSGAAAGGEEEAPSFAGELWQDVKCNVEMKKDILHINFLASHDLSNRVTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATALLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVVDNYIVLLCLVYCVTGIAYVLAIFLQPGPAQLWSALLPVVLTLVATYQNEDDSKYVKYLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSSGYDLKHWYQCLGLLIVMGIISRMLAFFCMITFQKK 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01887 1168 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 569 810 IPR003439 GO:0005524
Vimu5g01887 1168 ProSitePatterns ABC transporters family signature. 710 724 IPR017871 GO:0005524|GO:0016887
Vimu5g01887 1168 Gene3D - 558 809 IPR027417 -
Vimu5g01887 1168 FunFam ABC transporter G family member 24 563 805 - -
Vimu5g01887 1168 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 528 1155 - -
Vimu5g01887 1168 MobiDBLite consensus disorder prediction 1 24 - -
Vimu5g01887 1168 CDD ABCG_EPDR 567 793 - -
Vimu5g01887 1168 Pfam TCP family transcription factor 17 110 IPR017887 -
Vimu5g01887 1168 ProSiteProfiles TCP domain profile. 18 72 IPR017887 -
Vimu5g01887 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 806 IPR027417 -
Vimu5g01887 1168 MobiDBLite consensus disorder prediction 443 482 - -
Vimu5g01887 1168 SMART AAA_5 595 796 IPR003593 GO:0016887
Vimu5g01887 1168 Pfam ABC-2 type transporter 767 1168 IPR043926 GO:0140359
Vimu5g01887 1168 Pfam ABC transporter 589 738 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01887 Vimu-Chr5 30717673 30726321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01887 19 91 TCP Transcription Factor Family AT5G08330 66.216 6.85e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu5g01887 ABC2_membrane_7 5.2e-209 CL0181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01887 - - vum:124832789 1462.59