Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01875 ATGGGTGATATTGAGGGATCTCCGGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATTGCCTCTGTGGCTTCTCCTATGGTCCCAACTGACACAACGGCAAATTTTGCTTTGCCAGTTGATTCTGAGCACAAAGCCAAGGTTTTTAAACTGTTTTCTCTGGCCAATCCCCATATGAGAACCTTCCACCTCTCTTGGATATCCTTCTTCACATGCTTTGTCTCAACCTTTGCAGCAGCCCCTCTTGTCCCCATCATTCGAGACAACCTCAACCTCACCAAGAGTGACATTGGGAATGCCGGGGTTGCTTCTGTCTCCGGCAGCATCTTCTCCAGGCTCACAATGGGTGCCGTTTGTGACCTCTTGGGCCCTCGTTATGGCTGTGCCTTCCTCATCATGCTTTCTGCCCCAACTGTCTTCTGCATGTCGTTTGTGGATGACGCTGCAGGATATATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGTCAGTACTGGATGAGTACCATGTTCAACAGTAAGATTATTGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGAAACATGGGCGGTGGAGCCACTCAGCTCATAATGCCCTTGGTCTATGAATTGATCAGAAGAGCTGGAGCTACTCCCTTCACTGCCTGGAGAATTGCCTTCTTCATTCCAGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTGCCTGATGGTAACCTTGGTACCTTGCAGAAGAAGGGTGATGTTGCCAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAAGAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGGTACTCTATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTACGACAGGTTTAATCTGAAGCTACACACTGCTGGAATCATCGCTGCTTCATTTGGAATGGCAAATCTCCTGGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTCGGCATGAGGGGCAGGCTTTGGACCCTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCACTTCCCATTGCAGTCTTGGCTATGATCCTCTTCTCTATTGGCGCTCAAGCTGCATGTGGCGCCACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCCGGTCTAACTGGTGCAGGTGGCAACTTTGGCTCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCAAAGTTTTCTACATCCACTGGTCTCTCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCCCAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAAGACATCAATAAGTCAACTGAAGAATATTATTACACTTCTGAATGGAATGAGGAAGAGAAGCAAAAGGGTTTGCACCAGAATAGTCTGAAATTTGCTGAGAATAGCCGTTCAGAAAGAGGTAAGCGTGTGGCCTCAGCCCCCACACCACCAAACACAACCCCAACCCATATCTAG 1593 0.4827 MGDIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVDDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGDVAKDKFSKVLWYAIRNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDINKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPTHI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01875 530 MobiDBLite consensus disorder prediction 491 513 - -
Vimu5g01875 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Vimu5g01875 530 FunFam Nitrate transporter 2.1 265 466 - -
Vimu5g01875 530 MobiDBLite consensus disorder prediction 491 530 - -
Vimu5g01875 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 516 IPR044772 GO:0015112
Vimu5g01875 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vimu5g01875 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vimu5g01875 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Vimu5g01875 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
Vimu5g01875 530 FunFam High affinity nitrate transporter 57 254 - -
Vimu5g01875 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01875 Vimu-Chr5 30556029 30558055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01875 1 530 Inorganic Solute Cotransporters AT5G60770 80.755 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01875 K02575 - gmx:100807710 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00666 4 5147528 5148145 Vimu5g01875 5 30556029 30558055 PCT