Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01872 CTCCACACTACTGCTTTAAGTTGTATTCGCAATGTCATTGCTCGAACGCCATTGTTGGCTCTGTTTTCATCTTCTGTTACACCAATGTCTCACCATGCTGAATCGTCCGACTCGAAATCTGAGAAGAAAGACTTCTCGACAGCGATTCTGGAGCGGAAAAAATCTCCTAACCGATTGGTGATCGACGAAGCGGTTACCGATGATAACTCAGTGGTTTCCATGCATCCTGAAACCATGGAGAAAAATCAACTTTTTCACGGAGATGCTATCCTCATCAAGGGAAAGAAACGTAGGGACACGATTTGCATTGTTCAGGCAGACGAGAAATGTGAGGAAGCTAAGTTAAGGATGAATAAAGTTGTGAGGTGGAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTCTATTGCTCTGAAGTTCCGTATGGGAAGCGTGTCCGCATTCTTCCCATTGATGATACCATTGAAGGTGTCACTGGCAATCTCTTTGATTCATATTTGAAACCATATTTCATGGAGGCTTATCGTCCTCTGAGAATGGGAGATATATTTCTGGTTCGAGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTGTTGTCTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTGGATGATGTTGGGTATGATGATGTGGGTGGCGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCTCTTAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTCTGCTGTATGGACCCCCAGGATCTGGTAAGACCTTGATAGCAAGAGCTGTTGCTAATGAGACAGGAGCCTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAACCTTAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCCCCCTCCATCATATTTATTGATGAGATTGATTCTATTGCACCCAAGCGAGAGAAAACACATGGTGAAGTTGAAAGGAGGATTGTTTCTCAACTTTTGACTCTTATGGATGGACTGAAATCTCGTGCACATGTTATTGTTATTGGAGCTACGAATCGGCCAAATAGCATTGACCCTGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCAGACTTGAAGTCCTTCGCATACATACCAAAAACTTGAAGCTTTCAGATGATGTTGATTTAGAGAGAATTTCAAAAGATACTCATGGATATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATCCGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGAGCATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAACATTTCCTTACTTCTTTAGGAACTAGCAATCCATCTGCTTTACGTGAAACTGTTGTCGAGGTGCCCAATGTCAGTTGGGCAGATATTGGAGGTCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCTGAAAAATTTGAGAAATTTGGTATGTCACCATCAAAAGGAGTTCTGTTCTATGGTCCTCCTGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAGGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTTTTCTTTGACGAGCTTGATTCTATTGCTATCCAGAGAGGAAGTAGTGTTGGGGATGGTAGTGGAGCTGCTGATAGAGTTCTGAATCAACTTCTCACTGAAATGGATGGCATGTCTGCTAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGACCCAGCTCTTCTACGGCCTGGCCGTCTAGATCAACTGATCTATATTCCTCTCCCTGATGAAGAATCCCGTTATCAAATCTTCAAGGCATGCATGAGGAAGTCACCTGTCTCAAAAGAGGTTGATTTGGGAGCACTAGCTACGTATACTCAAGGCTTTAGTGGTGCTGACATAACAGAGATATGCCAGCGGGCATGCAAATATGCTATTAGAGAAGACATAGAAAAGGACATAGAGCAGGAGAAGAAGAGAAGAGAAAAGCCTGAGACCATGGATGAAGACAATGAAGAAGATGTTGCAGAGATAAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCTCGTAGGAGTGTTAGTGATGCTGATATACGTAAATACCAGGCATTTGCTCAGACCTTACACCAATCCCGTGGCTTTGGAAGTGATTTTAGGTTTCCAGAGTCTGGTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGAGCTGAAGAAGAAGATCTGTATAGTTAA 2487 0.4331 LHTTALSCIRNVIARTPLLALFSSSVTPMSHHAESSDSKSEKKDFSTAILERKKSPNRLVIDEAVTDDNSVVSMHPETMEKNQLFHGDAILIKGKKRRDTICIVQADEKCEEAKLRMNKVVRWNLRVRLGDVVSVYCSEVPYGKRVRILPIDDTIEGVTGNLFDSYLKPYFMEAYRPLRMGDIFLVRGGMRSVEFKVIETDPGECCLVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNLKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFLTSLGTSNPSALRETVVEVPNVSWADIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAIQRGSSVGDGSGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKEVDLGALATYTQGFSGADITEICQRACKYAIREDIEKDIEQEKKRREKPETMDEDNEEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLHQSRGFGSDFRFPESGGSDPFATSAAGAEEEDLYS 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01872 828 CDD RecA-like_CDC48_r2-like 516 676 - -
Vimu5g01872 828 FunFam Transitional endoplasmic reticulum ATPase 495 678 - -
Vimu5g01872 828 Gene3D - 403 494 - -
Vimu5g01872 828 Pfam Cell division protein 48 (CDC48), N-terminal domain 58 136 IPR003338 -
Vimu5g01872 828 SMART CDC48_N_2 58 140 IPR003338 -
Vimu5g01872 828 Pfam AAA+ lid domain 701 741 IPR041569 -
Vimu5g01872 828 Pfam AAA+ lid domain 424 466 IPR041569 -
Vimu5g01872 828 ProSitePatterns AAA-protein family signature. 372 390 IPR003960 GO:0005524|GO:0016887
Vimu5g01872 828 ProSitePatterns AAA-protein family signature. 648 666 IPR003960 GO:0005524|GO:0016887
Vimu5g01872 828 Pfam ATPase family associated with various cellular activities (AAA) 272 401 IPR003959 GO:0005524|GO:0016887
Vimu5g01872 828 Pfam ATPase family associated with various cellular activities (AAA) 545 678 IPR003959 GO:0005524|GO:0016887
Vimu5g01872 828 Gene3D - 682 790 - -
Vimu5g01872 828 NCBIfam CDC48 family AAA ATPase 62 794 IPR005938 GO:0016787
Vimu5g01872 828 MobiDBLite consensus disorder prediction 798 828 - -
Vimu5g01872 828 FunFam Transitional endoplasmic reticulum ATPase 35 139 - -
Vimu5g01872 828 Gene3D - 237 401 IPR027417 -
Vimu5g01872 828 Gene3D - 140 236 - -
Vimu5g01872 828 Pfam Cell division protein 48 (CDC48), domain 2 159 222 IPR004201 -
Vimu5g01872 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 488 IPR027417 -
Vimu5g01872 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 791 IPR027417 -
Vimu5g01872 828 SMART CDC48_2_2 157 223 IPR004201 -
Vimu5g01872 828 FunFam Transitional endoplasmic reticulum ATPase 233 401 - -
Vimu5g01872 828 Gene3D - 35 139 - -
Vimu5g01872 828 SMART AAA_5 541 680 IPR003593 GO:0016887
Vimu5g01872 828 SMART AAA_5 268 404 IPR003593 GO:0016887
Vimu5g01872 828 SUPERFAMILY ADC-like 54 136 IPR009010 -
Vimu5g01872 828 Gene3D - 495 678 IPR027417 -
Vimu5g01872 828 PANTHER AAA-FAMILY ATPASE 430 795 - -
Vimu5g01872 828 FunFam Cell division control 48 140 236 - -
Vimu5g01872 828 SUPERFAMILY Cdc48 domain 2-like 140 231 IPR029067 -
Vimu5g01872 828 CDD RecA-like_CDC48_r1-like 236 401 - -
Vimu5g01872 828 FunFam Cell division control 48 403 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01872 Vimu-Chr5 30533945 30545976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01872 474 804 Calmodulin-binding Proteins AT3G56690 41.692 2.80e-77 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01872 K13525 - tcc:18590940 1425.99