Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01868 ATGGGGGGGCTCAGCGTAAGAACCACCAGCAGCAGGAAAATGAGGGTTGTGGGATGTATTTTAAAGCTAAAGGGTGTGTTGGAAAAGCTTCAAAATAGCATCTTGTTGCAGAGACATAAATCAAGTTCCTGTGGAGGAGATTATGAAGCATTAGGAGATGACAGAGGGTGTGTTGCTGAAGATGTGAAAGAAGGGCATTTTGCTGTGATTGCAAAGGATAATATTGGAGAGGAGGCAAAGAGATTGGTGGTTCCGTTGAGCTGTTTAAAGAACGCAACATTCTTGAGACTGTTGGAGGAAGCAGCAGAAGAATATGGGTATGATCAACATGGTGCACTAACCATACCTTGCAGGCCTAGTGAACTTGAGATGCTATTGGCTCAACAATGGAAAGAAAGAAGACGATTCTGA 411 0.4355 MGGLSVRTTSSRKMRVVGCILKLKGVLEKLQNSILLQRHKSSSCGGDYEALGDDRGCVAEDVKEGHFAVIAKDNIGEEAKRLVVPLSCLKNATFLRLLEEAAEEYGYDQHGALTIPCRPSELEMLLAQQWKERRRF 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01868 136 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 125 IPR003676 GO:0009733
Vimu5g01868 136 Pfam Auxin responsive protein 43 126 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01868 Vimu-Chr5 30525504 30525914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01868 59 126 Calmodulin-binding Proteins AT5G20810 44.118 9.57e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01868 - K14488 vum:124826917 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01868 5 30525504 30525914 Vimu5g01868 5 30525504 30525914 ECH
Vimu4g00672 4 5186743 5187132 Vimu5g01868 5 30525504 30525914 PCT