Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01867 ATGGTGTCGGACGCTAGCAAGAAGAAGGCTGCTCAGAAGAAGGCCGCCGCCGCCGCTAAAAGAGGTGGAAAGGCCGCCGCCGCTGCCGTCGCCGCCGCTGCATCTTCCAAAGCTGCCGATAAGGCCGCCAACGGAATAGCCGAGATGCATATATCTGATCGGACCTGTACCGGTGTCCTCTGTTCACATCCTCTTTCCAGAGATATTCGAGTGAGTAACACTATCCCGCCTAGCTGGGCAGTTGGGTCTGTAGCTTGGCTATTCTACCATGTTGCCATGATAGAGTCTCTGTCTGTTACATTCCATGGACATGATCTCATTGTTGATTCTGAACTGGAGCTTAACTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAATCTACACTGCTTACAGCCATTGGTCAGAGGGAACTTCCAATTCCTGAACATATGGATATCTATCACCTCACCCGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCGGCACAGGATGATGGAGGTGGTGAGTCCCTGGAACGTGTTTACGAGCGATTGGATGCCTTAGACGCAGCAACTGCAGAAAAACGTGCTGCGGAAATCTTATATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGAATTGCATTAGCACGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCTACCAATCACCTTGGTATACTCTCTACCTTGGCAATCGTCCATCTTCGGCCTTTTAGGCATATTCAGTTTTTTGATTTAGTTATATTGAATTTGGTGTATGCATTTTGTTCCACTATTATTGTTGTTATGATTGTTGCCATTTTTGGAAATTTCTACCTGCTTGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTATACTGGTAACTATGATCAATATGTTCAGACACGTTCCGAGCTAGAAGAGAACCAGATGAAACAGTATAAGTGGGAGCAGGAGCAAATTGCCTCAATGAAGGAATATATTGCTCGATTTGGTCATGGTTCTGCAAAACTTGCTCGCCAGGCACAGAGTAAGGAGAAAACATTGGCAAAAATGGAACGTGGTGGACTTGCAGAAAAAGTAGTCAGGGACAAGGTTTTAGTTTTCCGTTTTACTGATGTTGGAAAACTTCCCCCTCCTGTTCTCCAGTTTGTTGAGGTGTCGTTTGGTTACACTCCTGATAACCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTCGCACTGGTTGGACCCAATGGGGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGATGCCTTCTGATGGCATGGTGAGGCGTCATAATCATCTTCGGATTGCTCAATATCACCAGCATTTGGCTGAAAAGCTAGACTTGGAAATGTCTGCTCTACAGTTTATGATTAAAGAATATCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCGATAGGGAAGTTTGGTCTATCAGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCTGATGGGCAGAGGAGTCGGGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCACAAATGCTTCTTTTGGATGAACCAACCAATCATTTGGATATTGAGACAATTGATTCTTTGGCTGAGGCATTGAATGAATGGGACGGTGGCCTGGTGCTTGTTAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTAATCAAAGTGTGACTAGATGGGAGGGTGACATTATGGAATTCAAGGCTCATCTAAAGGCCAAGGCGGGTAGTGGGGATTTCTCATTGCCCAAGGATTTCTCACTCGTTGTTCATGAGTGGGTGGTACCGTTTGAGTTGGATTTCCCTCAACTTGGACGATTTCCATTGGCATAA 2073 0.4462 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVAAAASSKAADKAANGIAEMHISDRTCTGVLCSHPLSRDIRVSNTIPPSWAVGSVAWLFYHVAMIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGQRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLDALDAATAEKRAAEILYGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLGILSTLAIVHLRPFRHIQFFDLVILNLVYAFCSTIIVVMIVAIFGNFYLLESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDLEMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKAKAGSGDFSLPKDFSLVVHEWVVPFELDFPQLGRFPLA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01867 690 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 315 654 - -
Vimu5g01867 690 CDD ABCF_EF-3 444 635 - -
Vimu5g01867 690 Gene3D - 91 397 IPR027417 -
Vimu5g01867 690 Coils Coil 351 371 - -
Vimu5g01867 690 Pfam ABC transporter 460 591 IPR003439 GO:0005524
Vimu5g01867 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 275 IPR027417 -
Vimu5g01867 690 Gene3D - 409 658 IPR027417 -
Vimu5g01867 690 ProSitePatterns ABC transporters family signature. 236 250 IPR017871 GO:0005524|GO:0016887
Vimu5g01867 690 Pfam ABC transporter 110 264 IPR003439 GO:0005524
Vimu5g01867 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 674 IPR003439 GO:0005524
Vimu5g01867 690 Pfam ABC transporter 344 420 IPR032781 -
Vimu5g01867 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 373 IPR003439 GO:0005524
Vimu5g01867 690 FunFam ATP-binding cassette sub-family F member 3 404 658 - -
Vimu5g01867 690 SMART AAA_5 116 296 IPR003593 GO:0016887
Vimu5g01867 690 SMART AAA_5 469 666 IPR003593 GO:0016887
Vimu5g01867 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 638 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01867 Vimu-Chr5 30519827 30522850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01867 444 637 Calmodulin-binding Proteins AT2G36910 25.446 1.01e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01867 K06185 - gmx:100809491 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00673 4 5190210 5194259 Vimu5g01867 5 30519827 30522850 PCT