Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01862 ATGGTTAACTCTGAAATGAATAGATCCGGGTACGGTGCTGACGGAATATACCGGTCTCTAAGGCCTTCTTTGGTTCTTCCACGAAACACCAATCTTTCACTCGTTTCGTTTCTCTTCCAGAGCGTTTCTTCTTTTCCGTCCAAAACCGCTCTCGTAGATGCTCACTTTTTTCAAACCCTCTCCTTCGCACAGCTCAAAGCCCAAGTAGCAAGGCTTGCCCATGGTTTCCTCAAACTGGGAATAAAGAAAAACGACCTCGTCCTTCTCCTCGCTCCCAACTCCATCCACTACCCCGTTTGCTTCCTCGCTGCCACCGCCATTGGAGCCATTGTCTCCACAGCCAACCCCATTTACACTGTCCACGAACTCTCGAACCAAGTCAAAGATTCCAACCCCAAACTGTTGATCACAGTTCCTGAACTATGGGACAAAGCAAAGAATCTCAACCTCCCCGCTGTCTTTCTCTACACCAACAACAACCTTCAGGACCCAACTAAAGACGTGTCGCCGAAAATCAGAACTCTTGATGCGCTAATGGAGATGGCAGGACCGGTGACGGAGCTGCCGGAGATTGAGATTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCTTCCGGGACCACTGGGCTGAGCAAAGGCGTGGTCCTGACACATGGGAACTTCATCGCGGCTGCTGTGATGATCAGCATGGACGACGACCTGGCTGGTGAGGTAGACGACGTGTTCCTCTGTGTTTTGCCTATGTTCCACGTGTTTGGGCTGATGGTGGTGACGTACACAGCACTGCGACGAGGGAGTGCAGTGGTGACTATGGAGAAGTTTGAGTTGGAGGCGTTTTTAAAAGCCATTGAGAAGCACAGAGTGACGAAGTTGTGGTTAGTGCCTCCTATTCTGCTTGCTATGGCGAAACAACAGAGTGTGGTTCGGAACTACAATCTCTCTTCGTTGAAGCGTATAGGTTCTGGTGCTGCTCCTCTTGGAAAAGAGTTGATGGAAGAATGTGGCAAGCATTTCCCTCATGTAGTTGTTTGTCAGGGCTACGGCATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGCAGGGATTCGTCATACTGGATCAACGGGAATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTGAGTGTGGAAAAACAAAAGCCTCTCCCTCCTAAACAGTTGGGGGAAATATGGGTGCGAGGTCCGAACATGATGAAAGGTAGAGGCATACCAGAATGCTTTATTCTGATACAAGTCTGCAACTTTTTAATCTGA 1281 0.4957 MVNSEMNRSGYGADGIYRSLRPSLVLPRNTNLSLVSFLFQSVSSFPSKTALVDAHFFQTLSFAQLKAQVARLAHGFLKLGIKKNDLVLLLAPNSIHYPVCFLAATAIGAIVSTANPIYTVHELSNQVKDSNPKLLITVPELWDKAKNLNLPAVFLYTNNNLQDPTKDVSPKIRTLDALMEMAGPVTELPEIEIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAAAVMISMDDDLAGEVDDVFLCVLPMFHVFGLMVVTYTALRRGSAVVTMEKFELEAFLKAIEKHRVTKLWLVPPILLAMAKQQSVVRNYNLSSLKRIGSGAAPLGKELMEECGKHFPHVVVCQGYGMTETCGIVSVENPRAGIRHTGSTGMLASGVEAQIVSVEKQKPLPPKQLGEIWVRGPNMMKGRGIPECFILIQVCNFLI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01862 426 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Vimu5g01862 426 Gene3D - 14 410 IPR042099 -
Vimu5g01862 426 Pfam AMP-binding enzyme 40 409 IPR000873 -
Vimu5g01862 426 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 409 - -
Vimu5g01862 426 SUPERFAMILY Acetyl-CoA synthetase-like 26 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01862 Vimu-Chr5 30476826 30480629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01862 6 409 Monolignol Biosynthesis Gene Families AT4G05160 64.604 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01862 K01904 - gmx:100808944 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00677 4 5230106 5233951 Vimu5g01862 5 30476826 30480629 PCT