Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01859 ATGGGTCAAGCCAAAGGTCGAGACAAGATAGACAAGACTAAAGGTCAAGACGAATCAACCTATGCCAAAGTTCAAGAATGTCGAGTCGAGCCAAAGGTTGAGATTAGTTGGACCAAAGGATGGACCAGTGTCACAATTCTGGTAGCTGTACCCATCAACTCACTAGTCCTGTTCTGTGTTGTCTTTCTTTCTGTATCGCAAACATTGGATGCTTTCTCTTTAGAGAAGACGAACGACAGAATGTGTGAGCCTTTCTATGCCTCTCAGGGAATACTCAAAAGAGAGAGAGATATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAGCTGAAGGAATACATAGACAAGAATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGGGAAGAGTTGCAGATTGAGATGGCTCAATTATCTCAGACCCAACATTAAGCATGGAGATTTCTCAGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGAACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATTGGGTTGCTTCCTCTTTCTCATCACACAAAACAACCTTCATTTCCATCATCTTCCCTTCAAAACCCTCCACCCTCTCCTTCGTCTCACCAACTGTACGGAGAATACGGTAACTACATCCCAGTAACAGCATCTTTCACAGGCATGGAACATTTTTCTCTTCCTTCAGCTAACTATGAAAGCACAACAGCCTCAGCTTCTCAAACTTTCTACCAAAACCAAGACTCCATGGTCAGCGTTACTCCCATGCAATGCTATTACCCTGTCAGTGACAGCATGCTCGTGTTTGGAAGCGAAGGAAGTTGCAGTTCCTCCGACGGAAGCTGCACTCAGGGAAGAGAAATGAAGCAAGAAGAAATCGGGTACCACAGTTACAACCATAACTTGATGCTCAGTTACAACACCAACGATGGAGAGAAGTCATGTGCTGGAGGGTGCTTCGACCAAACGCTAACACCGTTGGATTATGATCTTGAGGATATTAAGCAACTGATTAGCAGCAGTAGCAGGAGCTTGAATAATAATAATGTTGATGAAAACAAGAGAGAAGAGAAGGCGATGTACTGCTGCTATTACTAG 1221 0.4365 MGQAKGRDKIDKTKGQDESTYAKVQECRVEPKVEISWTKGWTSVTILVAVPINSLVLFCVVFLSVSQTLDAFSLEKTNDRMCEPFYASQGILKRERDMGRAPCCDKASVKKGPWSPEEDTKLKEYIDKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLIGLLPLSHHTKQPSFPSSSLQNPPPSPSSHQLYGEYGNYIPVTASFTGMEHFSLPSANYESTTASASQTFYQNQDSMVSVTPMQCYYPVSDSMLVFGSEGSCSSSDGSCTQGREMKQEEIGYHSYNHNLMLSYNTNDGEKSCAGGCFDQTLTPLDYDLEDIKQLISSSSRSLNNNNVDENKREEKAMYCCYY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01859 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 159 IPR017930 -
Vimu5g01859 406 Gene3D - 104 165 - -
Vimu5g01859 406 FunFam Transcription factor RAX3 104 165 - -
Vimu5g01859 406 Pfam Myb-like DNA-binding domain 166 208 IPR001005 -
Vimu5g01859 406 Pfam Myb-like DNA-binding domain 111 159 IPR001005 -
Vimu5g01859 406 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Vimu5g01859 406 SUPERFAMILY Homeodomain-like 108 206 IPR009057 -
Vimu5g01859 406 SMART sant 164 212 IPR001005 -
Vimu5g01859 406 SMART sant 110 161 IPR001005 -
Vimu5g01859 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 214 IPR017930 -
Vimu5g01859 406 CDD SANT 113 159 IPR001005 -
Vimu5g01859 406 Gene3D - 166 233 - -
Vimu5g01859 406 PANTHER OS09G0431300 PROTEIN 98 375 - -
Vimu5g01859 406 CDD SANT 168 208 IPR001005 -
Vimu5g01859 406 ProSiteProfiles Myb-like domain profile. 106 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01859 Vimu-Chr5 30448486 30454320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01859 98 216 MYB Transcription Factor Family AT5G57620 90.756 1.18e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g01859 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01859 K09422 - gmx:100779919 459.529