Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01842 ATCCGCGGAACTCTTTTCCGCCATCCCCAAATCCATGTAGAAGACAAACCCTACGAAGAACAAGTAGAAGGCAACGAAGCCGACGGCCTGCCAAAGGAAAATCTCGGCGCTGAGGTAGACGTAGAAGAGGAACATTGCAGCGGTGAGGTAGAAGAGAACATCCCTAACGAAAGGCGCGGGATCGACGGAGAAGGGCGCGGCGTAGATGGCGACAAAGCCGACGACGTGGGCGAAGACGAAGGTGCCGGCGGAGAGTATATCGCCGAAGCCAGTGCGGTACTGACCGGCGGACCTCCCGCTTCTCTAACAAACTCACTCACGCTCTATTTGCCCTTTCAAATCATTCACTCGGTTCATTCATTCATGCTCGCATTGCATTTTCGATCTTCTTTTGGTTCTTCTTTTCCTCTATGTTTCTGTTTCTCTCGAACTGTTAGGGTTTCGTCTCTCGTCTCTTTCCCTCTGTCTCTCTTCTCTGTCCCTCTCCGCGTCATGTCTAAGCCACCATCCGCCTTCGACGCTCTCATGTCCGCCGCTAAGAAGAATTCCAAATCCAAAACATCCAAGCTTTCATCACCTCCCAAGAAAAGAAAATCTCCACTCTCCATTTCCTCACAAAACCCTAGCAACCCCAAATCCCCCAAACTGCCTTCTCCTCCCATAACCGCTGAACCTGAGGCAGGTAAACAGGAAGAAGTTGTTAAACCCGAAACTGTTAAGCCGGAACCGCGAAAGATACGGCAACTGTCAACGTCTTCTTCTTCTAAGGGGAAGACCGAGGAGCTGAAGAAGCAAGTTCCGCAGCTGAAGCAGAAGCCTTCCAGTTTCGATCCCGCTTCGATTATTGCATGGGAGAAGGGACAGCCTGTGCCGTTTCTCTTCCTCGCCTTGGCATTCGATATGATTTCTCAGGAAAGTGGAAGAATAGTCATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTGAACACGCCAGAGGATCTTGTTCCCGTTGTTTACCTCTCCGCAAACCGGATTGCGCCTGCTCATGAAGGGTTGGAATTGGGAATAGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCTTATGGAAGGAACGAGAATTGGATTAAGACTCAGTATCAGAAAAAAGGTGATTTGGGCTTGGTTGCAAAAGAGAGCCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCGTTAACCATCAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTTCAGACGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTGTTGGCTGCACTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGAAGCTTCCAAAGACTTGTAAATTTACCCCAGGTGTTCCAATTAGACCTATGCTATCAAAGGCAGCAAAAAGTGTAACTGAAGTTCTGAACAAATTCCAGGATGTGGAATTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTGAAGAAAGCAAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTCGCATATGACCGTGCAACACAAAAACTTCTTTCTTTCCAGACCCTCAGTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTCTGTGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTTAGAGTCCGCAGAGAGGTACCTACTTTTATCTTTGCTCTGTCAATAGTACCTGATAAAGGACAATTAGAGATTGGAGCGAGGCAGCGTGTCAAAGCTTTTGTTCATGTCATCACCAAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGTTTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAGAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTGATTATTAAGACATTAAATGAGGACGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGACTTGGTACCTATTGCTGCTTTCCATGGGCGTGGAAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAACTATTTGCAAGATTGGAACGGGGTTCTCTGAATCTGTACTTGTAGAACGTTCTTCAAGTCTTCGTTCTCAAGTGATTTCCAAGCCGAAGTCATACTATAGATTTGGGGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGTGGGCATAGTAGATCCGAACAAGGGCATCTCTCTTCGTTTTCCAAGGCTGGTTCGAGTCCGGCATGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGATTGCTGAGTTGTATAAAGCCCAAAAACACAATCAAGCGAACAAACAAGATGACGAAGATGAAGAAGATTATTGA 2826 0.4529 IRGTLFRHPQIHVEDKPYEEQVEGNEADGLPKENLGAEVDVEEEHCSGEVEENIPNERRGIDGEGRGVDGDKADDVGEDEGAGGEYIAEASAVLTGGPPASLTNSLTLYLPFQIIHSVHSFMLALHFRSSFGSSFPLCFCFSRTVRVSSLVSFPLSLFSVPLRVMSKPPSAFDALMSAAKKNSKSKTSKLSSPPKKRKSPLSISSQNPSNPKSPKLPSPPITAEPEAGKQEEVVKPETVKPEPRKIRQLSTSSSSKGKTEELKKQVPQLKQKPSSFDPASIIAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLNTPEDLVPVVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNENWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWKLPKTCKFTPGVPIRPMLSKAAKSVTEVLNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKASVSSFILDCEIVAYDRATQKLLSFQTLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREVPTFIFALSIVPDKGQLEIGARQRVKAFVHVITKHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQTICKIGTGFSESVLVERSSSLRSQVISKPKSYYRFGETINPDVWFEASEVWEVRAADLTISPVHRAAVGIVDPNKGISLRFPRLVRVRHDKAPEQATSSEQIAELYKAQKHNQANKQDDEDEEDY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01842 941 ProSiteProfiles ATP-dependent DNA ligase family profile. 639 809 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu5g01842 941 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 181 672 - -
Vimu5g01842 941 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 557 565 IPR016059 GO:0003909
Vimu5g01842 941 Pfam DNA ligase N terminus 291 466 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu5g01842 941 Pfam ATP dependent DNA ligase domain 533 771 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu5g01842 941 FunFam DNA ligase 268 535 - -
Vimu5g01842 941 MobiDBLite consensus disorder prediction 182 211 - -
Vimu5g01842 941 FunFam DNA ligase 562 681 - -
Vimu5g01842 941 Gene3D DNA ligase/mRNA capping enzyme 533 701 - -
Vimu5g01842 941 Pfam ATP dependent DNA ligase C terminal region 796 907 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vimu5g01842 941 MobiDBLite consensus disorder prediction 228 244 - -
Vimu5g01842 941 NCBIfam ATP-dependent DNA ligase 349 923 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vimu5g01842 941 MobiDBLite consensus disorder prediction 921 941 - -
Vimu5g01842 941 CDD Adenylation_DNA_ligase_I_Euk 522 774 - -
Vimu5g01842 941 MobiDBLite consensus disorder prediction 42 72 - -
Vimu5g01842 941 FunFam DNA ligase 776 935 - -
Vimu5g01842 941 Gene3D - 702 776 - -
Vimu5g01842 941 Gene3D - 777 939 IPR012340 -
Vimu5g01842 941 Gene3D - 267 532 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu5g01842 941 MobiDBLite consensus disorder prediction 182 272 - -
Vimu5g01842 941 SUPERFAMILY Nucleic acid-binding proteins 779 925 IPR012340 -
Vimu5g01842 941 CDD OBF_DNA_ligase_I 779 924 - -
Vimu5g01842 941 ProSitePatterns ATP-dependent DNA ligase signature 2. 745 771 IPR016059 GO:0003909
Vimu5g01842 941 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 273 524 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu5g01842 941 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 525 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01842 Vimu-Chr5 30300368 30308893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01842 148 939 Core DNA Replication Machinery Family AT1G08130 62.871 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01842 K10747 - gmx:100783155 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01842 5 30300368 30308893 Vimu5g01842 5 30300368 30308893 ECH