Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01840 ATGGAAACCACCGCAGAGGTTGTTTCATCTAATTGTCTTCTTGTATCAGAGTACTCTGAGTCTAACCCCACGCAACTTTCTGCTATGGAACTTGGGATTCGGAATTTTGGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGCTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAATGAAGCTAAGAACTCTGAGGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTCAACAGTACTGCATAAACTGTGGAGCATGCATGGGCAAGTATTTTTGTGATATATGCAAATTCTTTGATGATGATTTTCTTCAATCTTGCAGACTTCAAAGAACCAATACCACTGTGAAGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAAATGTGGTAATGGAAAAGGGTCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCACACTATACATTTAGACTGTGTCAAAGAGATGGAAAAACATCATAGGTACTCATGTCCTGTATGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGGTTGCCTTAACTCCAATGCCTGAAACCTTAAAAAACAAGACGGTGTGGATTCTTTGCAATGATTGTGGAGTGAAATCTCATGTTCAGTTCCATATTGTGGCACATAAGTGTTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCACCTGCTACACCAGGCTCGTCTAGAGTGACAGAAATGGTGATATGA 864 0.4178 METTAEVVSSNCLLVSEYSESNPTQLSAMELGIRNFGCTHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDVVDRHDVPRHEIKKVQQYCINCGACMGKYFCDICKFFDDDFLQSCRLQRTNTTVKNVAFAELEARITFSTARNVVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHHRYSCPVCSKSICDMSSLWKKLDKVVALTPMPETLKNKTVWILCNDCGVKSHVQFHIVAHKCLSCNSYNTRQIQGAPATPGSSRVTEMVI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01840 287 ProSiteProfiles Zinc finger CHY-type profile. 31 119 IPR008913 GO:0008270
Vimu5g01840 287 ProSiteProfiles Zinc finger RING-type profile. 163 206 IPR001841 -
Vimu5g01840 287 SMART ring_2 163 205 IPR001841 -
Vimu5g01840 287 FunFam RING finger and CHY zinc finger domain-containing protein 1 234 277 - -
Vimu5g01840 287 Pfam CHY zinc finger 38 108 IPR008913 GO:0008270
Vimu5g01840 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 271 - -
Vimu5g01840 287 ProSiteProfiles Zinc finger CTCHY-type profile. 98 162 IPR017921 -
Vimu5g01840 287 CDD RING-H2_Pirh2-like 162 206 - -
Vimu5g01840 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 216 IPR013083 -
Vimu5g01840 287 Gene3D - 234 275 - -
Vimu5g01840 287 SUPERFAMILY RING/U-box 162 209 - -
Vimu5g01840 287 Pfam Zinc-ribbon 210 268 IPR039512 -
Vimu5g01840 287 SUPERFAMILY CHY zinc finger-like 35 98 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01840 Vimu-Chr5 30282574 30285088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01840 36 277 C2H2 Transcription Factor Family AT3G18290 34.351 2.20e-41 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01840 5 30282574 30285088 Vimu5g01840 5 30282574 30285088 ECH