Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01839 ATGGTGGTCGGCGGCGGCGACGGCGGCGGTGGTTTCAAAACCATCACTGTGCCGCCTAAAGCTATTGTCTTCTTGAACCAATGGTGGCTTGTGAAGCAACGCAACGGTTTAGCCGTCGGAGGGGTTGCTTCCGTCGGGAGAGACAGAGAAAGAGTGTTTATGTCCACCGTCATTGCGGAGAGAGAAGAAGCCAATGTCGTACGTACTCAAGATGACACCACTATTGTTTTCCGTGGTTTCGTCGACACCTCTCGTTCATCTCAGAGTGGCGTCCCCTTAGAGGTTTCTCAACACTTCCTGGTTGGATTTCCATACAATTGGAGCACGTATTCTTCAATTGATAACATAGAATGCGAATCTAACAATAGTGAAAAAGGAATCCCAGTTGAAAGCCAAGCCAATGGTAAATCTTCGATCGGTATGTATGATTCCACAGGCCCTTCTGGAAAAAACATCGTTAAAACTCAAACTTCGGCCAAGAAAAAGAAAGCTGTTAGAGAAAAGATAGGGTTGGATGCAAGTAGGATGGTAACGAGAAGCATTTCTAAAAATAGTCAATCAATGCCCAAAGAAGACGAGAAAGATCCAATAGCCAATGTTTTTTCTCAAGTTAGGAGATCTCCCAGGCTATATAGTTGTAAATAA 645 0.4465 MVVGGGDGGGGFKTITVPPKAIVFLNQWWLVKQRNGLAVGGVASVGRDRERVFMSTVIAEREEANVVRTQDDTTIVFRGFVDTSRSSQSGVPLEVSQHFLVGFPYNWSTYSSIDNIECESNNSEKGIPVESQANGKSSIGMYDSTGPSGKNIVKTQTSAKKKKAVREKIGLDASRMVTRSISKNSQSMPKEDEKDPIANVFSQVRRSPRLYSCK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01839 214 Pfam SANTA (SANT Associated) 23 110 IPR015216 -
Vimu5g01839 214 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 23 148 - -
Vimu5g01839 214 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01839 Vimu-Chr5 30277247 30278148 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g01839 SANTA 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01839 - - vra:106755867 388.267