Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01838 ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGATGAAGATCCTAGCTTAGATCATTTGATCAATTTCATTCGTTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCTTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAACTCCTTCTCTTGTTTTGATGGAGAAGCCAAAGGAGGAAGAGGAGGAGAAGAGGAAGATGACATGGAGCACTCATATGCAACAACAAGCACAACAACAACATCAACACCTACTAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTGTCATATATGCACGACCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAACTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGATATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAAACTCTGAGCCAGAAATTAACCTGCACAACATGAAGATTTGCGTGTGTGAAGCTTTTGTGAAGCAAGGATTTGAATTCATGCCATTTTTAATGCTTGACTCTTTCAATATGTAA 963 0.3853 MDKSYLHQETLLHIDDFELHDFDEDPSLDHLINFIRLEKKDATCDFNSELINEAFIDNSFLPHPAIPYDQCNSNAMNVYDSNSFSCFDGEAKGGRGGEEEDDMEHSYATTSTTTTSTPTKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHDLQAQANMLKAEVEALETSLLLSKNYQGSVENPMKDELTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGVAASLYKALESLTGFHVQNSNLSTVGNSFQLTFSLNVKNSEPEINLHNMKICVCEAFVKQGFEFMPFLMLDSFNM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01838 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Vimu5g01838 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 281 - -
Vimu5g01838 320 MobiDBLite consensus disorder prediction 90 135 - -
Vimu5g01838 320 Gene3D - 117 191 IPR036638 GO:0046983
Vimu5g01838 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vimu5g01838 320 SMART finulus 131 180 IPR011598 GO:0046983
Vimu5g01838 320 MobiDBLite consensus disorder prediction 107 121 - -
Vimu5g01838 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Vimu5g01838 320 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Vimu5g01838 320 Coils Coil 171 191 - -
Vimu5g01838 320 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01838 Vimu-Chr5 30271497 30273605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01838 11 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.231 3.05e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g01838 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01838 K26214 - gmx:100778649 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00690 4 5335311 5336732 Vimu5g01838 5 30271497 30273605 PCT