Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01833 ATGATGCCAAAGGCTACATCTTCCTCCTCAAACGATTTTCAAGCATCTCAAATGTTTCCTGTGAATGAATATTTGGGTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTCTTCTCAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTCTTGTCACCCCTCAACATAACCTAACTCCCATGGCAATCTCCACCATGAACGCAACACTCCAAGAAATCATAGTGGCAGCAACATCAATGAGATTCACCTGCCAGCAAATGACTCTCGTGTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAATTGCAGCTTTGAGCAACCCAATGAAAAGCAGGGATAGTTTATTGGGTGAGGGAAGTTCCAGCAAGAAATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCAAAGTTCCAGCCATTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCATTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAGCAGTTTTCAGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACGCCAAGTGGCAGTGCTCCTGTGGCACAACATTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGACACAACCCAGCTGTTCATGGCTTCTCAACATATGTTCGATGA 765 0.4588 MMPKATSSSSNDFQASQMFPVNEYLGSSSVELSSSSTSHSSTSLLCYLSLLKDKLGQLQNLVDVLVTPQHNLTPMAISTMNATLQEIIVAATSMRFTCQQMTLVCGKGFKRDANLRMHMRAHGEEYKTIAALSNPMKSRDSLLGEGSSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDAKWQCSCGTTFSRKDKLMGHVALFVGHNPAVHGFSTYVR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01833 254 Pfam Zinc finger, C2H2 type 96 122 IPR013087 -
Vimu5g01833 254 Gene3D Classic Zinc Finger 82 125 - -
Vimu5g01833 254 Gene3D Classic Zinc Finger 188 238 - -
Vimu5g01833 254 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 104 246 IPR044300 GO:0010044|GO:0010447
Vimu5g01833 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 127 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01833 Vimu-Chr5 30223716 30224837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01833 86 250 C2H2 Transcription Factor Family AT5G22890 69.461 2.07e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g01833 zf-C2H2 0.00041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01833 - - vum:124833786 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00695 4 5373735 5374991 Vimu5g01833 5 30223716 30224837 PCT