Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01830 ATGATGGAATTACCTGAAGGGAATTGGTTTTGCTGTTCAGAATGTGAGAACATTAATGGTACTTTGGTGAATTTGGTGGCTCGTGGAGAAGAGAATCTTCCAAATCCCCTCTTGAATTTGATCAAAAAGAAATACAATAACAAAGGCTTAGAATTTGGGTCTGATGTTCATATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTGAATCTGAGGAGACAAGACAACTGCTTTCAAAAGTTGTTGCTATTTTTCATGAGCAATTTGATCCAATAGTTCATACTACAACTGGGACTGATTACATTCCTGCAATGGTTTTTGGGTTAGCAGAATCAACTTTGATTTGTTCTATTACCTTATTGTTTTCTGATATGCATGAACACAAGATAAAATCAGTTTTTATTATTTGA 408 0.3505 MMELPEGNWFCCSECENINGTLVNLVARGEENLPNPLLNLIKKKYNNKGLEFGSDVHIKWRLLNWKVGESEETRQLLSKVVAIFHEQFDPIVHTTTGTDYIPAMVFGLAESTLICSITLLFSDMHEHKIKSVFII 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01830 135 PANTHER AUTOIMMUNE REGULATOR 3 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01830 Vimu-Chr5 30200374 30201966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01830 1 107 PHD Transcription Factor Family AT2G36720 45.794 3.12e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01830 - - aprc:113859749 135.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00698 4 5407650 5415388 Vimu5g01830 5 30200374 30201966 PCT