Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01829 ATGGCGAAGAATACAAATTCAGAGCATTTTGTGGAGTTGTATGAAGTTCGAAAAGGTTTGAAAAGGGAATTTGCCTTTGCTATGAAGGCACAATCTCAGATATGTGATTCTCTAGGCCGAACTCGATCAAAAAAGGCTCAAACTTTGGTTGAGGTATCAACTAATTCATCCAACAAAAAATCTAGGTTACCAAAGATTAAAAATCTAACAAATTTGGTAAAAAACAATGTTGCTCTAAGTGAAAAGGAAGTAAAAAGTGATGTGATGGATACAAAAAACCTTAAAAGTCAAGTGAGTGATGAAGCAACGATGTTGTTTATGTGTGAAAAAGAGCACAAGAGTGATGTAACCATTGTTATTTGTGACAAAAATGATGAACCTAAGACTGAGATTGTGCAAACACAACCTGTTTGTGATAATGACATAATGAAAGAGAAAGATGACAATGATGAGGTTGTTTCAACTTTGGGTTACAAGTTGAAAATCCCAGTAAAGTCTACACAATCAACATTAAACAAATTAGAAAATTATGATAGCAAGGTTAAGAGTAATGATGTTTATAAAGAAAGAAAAAATGTTTCTATGATTATTGCTTCAACTACTCCAATGACATCTTTTATGCGAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGAATTCTTGAAGGACTACTTGTGAAATATGTTCGCAGCATTAAGGCAAAATCTATAGGACTTCTGGGAGTTATTTCTGGCATTGGAATATTGTGTTATTGTGAAGTTTGTAACAAAGTTGAAGTTGTGTCACCCACAATTTTTGAGTTGCATGCTGGTAGCTCAAACAAGCGTCCTCCTGAATATATTTTCCTTGAGAATGGAAGTACTCTTCGTGATATCATGAATATATTTTTGAATATTCCATTAAACACTTTGGAGGAAGTTGTTCAAAAGGCTTTGGGAGACTTCACAATGAAAAAATCTAAGTTTTGCGTAAATTGTAGAGATGTCAATGTTGTATCGAAATTATTCTGTAATTCATGCGTGGAATTACTAAAGGATTATCAAGCTAATCCCATCTCAACAAATGACAACAATAATACCTTTGCGGTTCAATCCAGGTCCTCAGAGTTAGTTATGTTTCCAAAGTCACTAAGTCGTGGAATGAAACATATCACATCTCATGGAAATAGTAGAGGAAAATTAACTAGAAAGGATGTACGCTTGCATAAACTAATATTTGAGGAAGATGGGTTGCCAGATGGAACTCAAGTTGGATACTATATTCATGGAAAGGTTGTCTTGATAATAACCTATTATCTGGTTATAAGAATGGATCTGGAATTGTTTGTAATTGTTGCAATCGTGAGTTATGTACACATATGTGTATCTAATGGACTATCACTCCATGATTTGTCTATCTCCCTATCACAAGGTCGTAAATTTTCTACCAATGATAATGATGACCTATGTAGTATATGCAGAGATGGAGGAAATCTTCTGTGTTGTGATGGATGCCCAAGAGCTTTTCACACAGATTGTGTATCTCTTCCATGTATTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAGAATTTGTCTGAAAATAACAAATATATTGAGCATAATGAGAGTACCAAGGTTGTAGGGAGAGTTGAAGGCATTGATCCCTTAGAACAGATAAACCAGAGATGCATCCGTATTGTCAAAGAATTTGAAATTGGTGGATGTGCATTGTGTAGGTAA 1731 0.3455 MAKNTNSEHFVELYEVRKGLKREFAFAMKAQSQICDSLGRTRSKKAQTLVEVSTNSSNKKSRLPKIKNLTNLVKNNVALSEKEVKSDVMDTKNLKSQVSDEATMLFMCEKEHKSDVTIVICDKNDEPKTEIVQTQPVCDNDIMKEKDDNDEVVSTLGYKLKIPVKSTQSTLNKLENYDSKVKSNDVYKERKNVSMIIASTTPMTSFMRKKFPSKLKDLLSSGILEGLLVKYVRSIKAKSIGLLGVISGIGILCYCEVCNKVEVVSPTIFELHAGSSNKRPPEYIFLENGSTLRDIMNIFLNIPLNTLEEVVQKALGDFTMKKSKFCVNCRDVNVVSKLFCNSCVELLKDYQANPISTNDNNNTFAVQSRSSELVMFPKSLSRGMKHITSHGNSRGKLTRKDVRLHKLIFEEDGLPDGTQVGYYIHGKVVLIITYYLVIRMDLELFVIVAIVSYVHICVSNGLSLHDLSISLSQGRKFSTNDNDDLCSICRDGGNLLCCDGCPRAFHTDCVSLPCIPSGTWYCRYCQNLSENNKYIEHNESTKVVGRVEGIDPLEQINQRCIRIVKEFEIGGCALCR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01829 576 SUPERFAMILY FYVE/PHD zinc finger 476 526 IPR011011 -
Vimu5g01829 576 Pfam PHD-finger 486 527 IPR019787 -
Vimu5g01829 576 ProSiteProfiles Zinc finger PHD-type profile. 483 528 IPR019787 -
Vimu5g01829 576 PANTHER AUTOIMMUNE REGULATOR 453 576 - -
Vimu5g01829 576 Pfam Tify domain binding domain 244 297 IPR032308 -
Vimu5g01829 576 CDD PHD1_AIRE 485 525 - -
Vimu5g01829 576 ProSitePatterns Zinc finger PHD-type signature. 486 525 IPR019786 -
Vimu5g01829 576 SMART PHD_3 485 526 IPR001965 -
Vimu5g01829 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 553 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01829 Vimu-Chr5 30189119 30192900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01829 396 575 PHD Transcription Factor Family AT2G36720 47.692 2.12e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu5g01829 TDBD 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01829 - - aprc:113859749 569.311