Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01826 ATGGAATTCTCTTACCGCAGATTGCTGCTGCAGAACGAGGACGTTCCAATCTCCACGTCCATGCCTCCTCTTCCTCACGCCAAACACGTCACAAACGCTTCCTCGCCGCAAGTGTCCTTAGGAGGCCCTCTGGAAGTGTCCATTCGTCCGGTGTTCACTTCGAGCGTTGCCTACGTCTTCCTCATCCTCTTCACCACTTTCTTCTTCATCGGATTCGTGTTTCTCTACTTCCAACAGCACGCCTCCTCGTCGGACTCCGAGTCCGGCGCCATCCGCCGTCGAGCACAGTCGGAGTCCGTGGCGGAGAAGTCTCTGGCGGTGGTGGCGGATGCGGCGAGGCAGGGGGATTGCGCGATATGTTTGGAGGAGGTAGGAGAGGGAGAGGCGGTGAAGATGATTGCGTACTGCAAGCACGTGTTCCACGCGGATTGCATTGATAGGTGGCTGGAGAAGCAGGTGACGTGCCCCGTGTGCCGGTGCTGCTGCGAGAGGTGTGGAGAGGTGGAGTCGGTGACGGTGAGAGGAGGCGAAGAAGAAGATGGAGAAGTGGTTTCCGTAACAAGCTTGGATTAG 573 0.5759 MEFSYRRLLLQNEDVPISTSMPPLPHAKHVTNASSPQVSLGGPLEVSIRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQHASSSDSESGAIRRRAQSESVAEKSLAVVADAARQGDCAICLEEVGEGEAVKMIAYCKHVFHADCIDRWLEKQVTCPVCRCCCERCGEVESVTVRGGEEEDGEVVSVTSLD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01826 190 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vimu5g01826 190 SUPERFAMILY RING/U-box 116 163 - -
Vimu5g01826 190 PANTHER RING FINGER DOMAIN-CONTAINING 25 162 - -
Vimu5g01826 190 SMART ringv_2 116 159 IPR011016 GO:0008270
Vimu5g01826 190 Pfam Ring finger domain 116 159 IPR001841 -
Vimu5g01826 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 159 IPR013083 -
Vimu5g01826 190 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01826 Vimu-Chr5 30152214 30154225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01826 52 186 Rapid Response to Elicitors AT3G05200 36.364 9.54e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01826 - - var:108339852 327.791