Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01823 ATTGATGTTGGTGCCTCCACCATGGCTGGAACAACTCTTGTCGACCACATTCTTCACCATATGCGAAACTCACATCAACACACCCAGAAACGAATTGTAATGCAGATAAGGAGATCGTCTTATCATGATGTTGTGAGGGTAGCAGAGATTCAGAAAGTATTGGATATCAGTGGCGTTCAGACTTATGTGATCAACAGTGCTAAAGTTATTTTCCTGAATGAGAGGCCTCAGAATCAATCAAAAACCAATAACATGGTTGGTGGTGGAAAAAGCAATTCTCATTTGTGTGAAATTTGCAGAAGGAATCTCTTGGATACTTTTCGTTTCTGTTCTTTGGGATGCAAGGTTGAAGGAACAAAGAAGAATGGGAATGCGAGGTTTGTCTTAAGCGCAAAGAAAGACGAAGAAATAGGGAGAATGCATGAAGGAATGAGAAGAAGGTTGACATCAAAGGAAGAATTGCGTGAAGAAATCCACAAACAAGTGTACCAAAGCACGTCTTCTAATTCACATATAAGGCCATCCCTACAACATGGTTGTTCAAATTCAAGGAGAAGAAAAGGGATACCTCATAGGGCACCTTTAGGTCCATAA 594 0.4057 IDVGASTMAGTTLVDHILHHMRNSHQHTQKRIVMQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSAKVIFLNERPQNQSKTNNMVGGGKSNSHLCEICRRNLLDTFRFCSLGCKVEGTKKNGNARFVLSAKKDEEIGRMHEGMRRRLTSKEELREEIHKQVYQSTSSNSHIRPSLQHGCSNSRRRKGIPHRAPLGP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01823 197 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 195 - -
Vimu5g01823 197 MobiDBLite consensus disorder prediction 162 182 - -
Vimu5g01823 197 Pfam PLATZ transcription factor 37 116 IPR006734 -
Vimu5g01823 197 MobiDBLite consensus disorder prediction 162 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01823 Vimu-Chr5 30129000 30130189 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu5g01823 PLATZ 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01823 - - gmx:100787414 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01823 5 30129000 30130189 Vimu5g01823 5 30129000 30130189 ECH