Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01818 ATGTCTCGTCGCGGCTCTAAGCAATCGGATTTCAATCATCCGCTGCAATCCTCGGCTTCTTCTTCCGCTGCCGGAGGCCGAGGCCGCGGTCGCGGCCGTGGACATTCTGCTCCGTCTCCTCCGGCTCAAACATTTTACCCTCGTCCTGTACAAACATCATCCGCTGCTTCTCCGGCCCCGTCTACCGCCGCTCCTCCCCGTGCCGTGGCGCCTGTTCCTGCATCAGCAGGCCCGGGTCCATCCCGCCCTCCGCCAGTCCAAGCCTCGCCGGCGCCAGTTCCTGGATCGGGAGCGGTTGCTACAACGGCGCCGCCGGCAGTTCAAACAGTTACTTCGGCGCTCGAGAAGCAACTTACATTGGAGACGTCAGCACCGTCATCGTCGAAGGCTGTGAGATTCCCAGACCGGCCAGGATTTGGGATAGCGGGAAGGAAGATACAAATTCGAGCAAATCATTTCCAAGTTAAAGTTGCGGTGCCCGAAATATATCACTACGATGTGGCAATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATAGACTTGTTGGTTCGAGCACACTGTGAATCGATTCTGGGAAATCGCATGCCCGCTTACGATGGACGAAAAAGTCTTTTCACCGCGGGACCTCTCCCTTTTGAAATCAAGGAATTTAAGGCCAAACTGGGAGATAACGATGAACCAGGGTCTTCTGCCACCTCTACTTCTTCTAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATCCGATTTGCTTCGAAGACTGACCTTAATCACCTTACTCAATTTCTCAGTTGCCGTCAGTTGGACTGCCCGCAGGAAACTATTCAGGCCCTTGATGTTGTTCTGCGGGCTACACCTTCTGAGATGTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCCGAACTGGGACCAAAAGGACCGTTGGGTAATGGAACTGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTCTCAGCTAGGGCATTTTACGAGGCCATTCCTATCCTTGACTTCATATCGAAGAATTTTAGACTCGATCTTCGCAGGCCTTTGCCTGATCAGGACCGAATTAAGATTAAGAAAGCTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTCACAAAAGAACCGCTCAGAGCCTTAATGTTTACTGATGAAAATGGAACCAAAAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGTAGTGACACTAAGCCAATATTTTTGCCTATGGAGCTTTGTCAAATTGTTGCTGGACAGAGATACACTAAGAGATTAAATGAAGATCAAGTGACTGCTCTTTTACGGGCCACATGTCAGCGCCCTCGTGATAGGGAAGACTCCATCAGAAAGATTGTGAGGCAGAGCAAATTCAGCACGGACAAATTTGCCCGCCATTTTCAAATTGAAGTGAGGGAGGATCCAGTAGTACTTGATGCTCGTGTATTACCTCCTCCTATGCTTAAATACCATGGATCGGGAGGTGAATCACAGGTTCAACCAATGATGGGACAGTGGAATATGATTAATAAGAAAATGATTGCTGGTGGTACTGTTGAACACTGGACTTGCCTAAACTTCTCTGGAAGAATACACAGAGATCTGCCATATCAACTTTGTCAGAATTTGGCTGAAATGTGTAACAGCAGGGGAATGCGGTTTAAACAAAGTCCTGTAGTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTGCGGAACCTGCATAAGCAGTGTAAACAGGCGAATATAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCGTATGGAAAAATAAAGCGCATCTGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGCCAGCCCAGACAATTAGGAAAAATGAGCAAGCAATATCTTGAAAATCTGTCCCTCAAGATAAATGTGAAGGTGGGTGGTACAAACACGATATTGAATGATGCATATGTGCATAGAATACCTCATGTCTCCGATGTACCTACAATAATATTTGGGGCAGATGTTACCCATCCCCAGCCAGGGGAGGACAGCAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAGAGGAGTTGTTTCTGCGCAGAAACATCGGGACGAAATGATACACGATCTTTATATTGGAGATCCGGCAGCGGGAATTCCACATTCAGGAATTATCAGGGAGTTGTTTCGTGCTTTCCGTAATTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTCTATGAAATGGATGCCATAAGAAAGGCTTGTAGCTCTTTAGAACCGGGTTATTTACCCCCAGTTACTTTTGTGGTGGTTCAAAAGAGGCACCACACTCGGTTGTTCCCTGCGGATCACGGACCAAGAGCACGTGATAGTACAGATAGAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGGAACAAGCCGACCAACTCATTATCATGTATTGTTCGATGAGAATAAATTTACTGCTGATGAGTTGCAGATTTTGACCAATAATTTGTGTTACACCTATGCAAGGTGCACAAGATCAGTTTCAATAGTTCCTCCCGCCTATTATGCCCATTTGGCCGCTTTCCGTGCTCGGTATTACATTGAAGGTGACACATCGGATGCTGGTTCTTCAACTGGAGGCAAGGGTATTTCAGCCAGCTTTGAGGTTAAACTGCCCTCGGTGAAGGGTAATGTCGCCGACGTGATGTTTTTCTGTTGA 2967 0.4594 MSRRGSKQSDFNHPLQSSASSSAAGGRGRGRGRGHSAPSPPAQTFYPRPVQTSSAASPAPSTAAPPRAVAPVPASAGPGPSRPPPVQASPAPVPGSGAVATTAPPAVQTVTSALEKQLTLETSAPSSSKAVRFPDRPGFGIAGRKIQIRANHFQVKVAVPEIYHYDVAITPEITSKKVSRDVIDLLVRAHCESILGNRMPAYDGRKSLFTAGPLPFEIKEFKAKLGDNDEPGSSATSTSSRKKREREFRVTIRFASKTDLNHLTQFLSCRQLDCPQETIQALDVVLRATPSEMFDVVGRSFFSPELGPKGPLGNGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPILDFISKNFRLDLRRPLPDQDRIKIKKALRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFTDENGTKKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKRLNEDQVTALLRATCQRPRDREDSIRKIVRQSKFSTDKFARHFQIEVREDPVVLDARVLPPPMLKYHGSGGESQVQPMMGQWNMINKKMIAGGTVEHWTCLNFSGRIHRDLPYQLCQNLAEMCNSRGMRFKQSPVVPITSSPSGQIENALRNLHKQCKQANIGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPRQLGKMSKQYLENLSLKINVKVGGTNTILNDAYVHRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYRGVVSAQKHRDEMIHDLYIGDPAAGIPHSGIIRELFRAFRNSTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACSSLEPGYLPPVTFVVVQKRHHTRLFPADHGPRARDSTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDAGSSTGGKGISASFEVKLPSVKGNVADVMFFC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01818 988 SMART DUF1785_2 295 347 IPR014811 -
Vimu5g01818 988 MobiDBLite consensus disorder prediction 7 24 - -
Vimu5g01818 988 MobiDBLite consensus disorder prediction 225 244 - -
Vimu5g01818 988 MobiDBLite consensus disorder prediction 46 60 - -
Vimu5g01818 988 Pfam Argonaute linker 2 domain 485 531 IPR032472 -
Vimu5g01818 988 FunFam protein argonaute 10-like 699 988 - -
Vimu5g01818 988 SMART Piwi_a_2 631 951 IPR003165 GO:0003676
Vimu5g01818 988 FunFam Argonaute 10 523 693 - -
Vimu5g01818 988 SUPERFAMILY PAZ domain 343 498 IPR036085 GO:0005515
Vimu5g01818 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 952 - -
Vimu5g01818 988 CDD PAZ_argonaute_like 347 458 - -
Vimu5g01818 988 SMART PAZ_2_a_3 348 475 IPR003100 GO:0005515
Vimu5g01818 988 Pfam Piwi domain 632 950 IPR003165 GO:0003676
Vimu5g01818 988 ProSiteProfiles PAZ domain profile. 348 459 IPR003100 GO:0005515
Vimu5g01818 988 Pfam Argonaute linker 1 domain 297 346 IPR014811 -
Vimu5g01818 988 MobiDBLite consensus disorder prediction 1 101 - -
Vimu5g01818 988 Gene3D paz domain 342 463 - -
Vimu5g01818 988 Pfam PAZ domain 355 475 IPR003100 GO:0005515
Vimu5g01818 988 ProSiteProfiles Piwi domain profile. 631 951 IPR003165 GO:0003676
Vimu5g01818 988 Pfam Mid domain of argonaute 542 620 IPR032473 -
Vimu5g01818 988 Gene3D - 523 694 - -
Vimu5g01818 988 SUPERFAMILY Ribonuclease H-like 616 951 IPR012337 -
Vimu5g01818 988 MobiDBLite consensus disorder prediction 64 91 - -
Vimu5g01818 988 Gene3D - 700 988 IPR036397 GO:0003676
Vimu5g01818 988 CDD Piwi_ago-like 503 950 IPR045246 -
Vimu5g01818 988 Pfam N-terminal domain of argonaute 144 286 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01818 Vimu-Chr5 30046718 30052663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01818 109 988 Eukaryotic Initiation Factors Gene Family AT1G48410 57.112 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01818 K11593 - gmx:100799033 1353.96