Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01816 ATGGAGAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTACAGGCGTGGAGGGTACCATGCCGTTCGAATCGGCGATGCTTTCAACAACGGCCGCTACGTCGTGCAGTCCAAGCTCGGTTGGGGCCATTTTTCCACCGTTTGGCTCGCTTGGGACACTCTCATTTCGGTACCTCCATTTTTCAACTCCGTTCCTTTGGTGAATGAAGCCGTGAAAGGGGAAATGGACCATTTGGGTTGGAGTTGGGAAAGGATTCCATGGACTTTTAAAGGAACTGATTATGTTAGAGTGCTAAAATATGCCCTTAAAATTCAAAAGAGTGCGCAACATTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATAGCCGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTCAAGCATTCGGGGCCTAATGGACAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATTAAATATACTGACTATCGTGGGGTTCCACTCCACATGGTTAAAGAAATCTGTTTTCATATATTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTTATACACACTGATTTAAAGCCAGAAAATGTGTTGCTTCAGTCACTGATAAATGCATCCAAAGATCCTAGGAAATCAGGTGCTTCACTCATCCTTCCGAATACTAAGGGTAAGGCCGCGTCTAATAATGGGACTCACCAAGACAATAAAATTTTGAATGGAGATCCACTGAAGAACCAGAAAAAGAAAGTGAAGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTGGGACGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGACCCGAGCAAGAAGATTGTGGCAATGATGTAAAATCAAGTGTAGAATCTGTTGAAGATAAACCTGATAGTTCTCTGAGTAAAGATGAATCAACAAAGAATTTTGAAAAGGATGCTGCACAAGGAAGTCATAGTCATATGAGTAGCAGCCGTTTGATGAAAAAGAAATTGCTGGCAGCCGTTGATCTTAGGTGCAAGCTGGTTGATTTTGGAAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGGTCCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTAGGAGGACGCTATTCTCGAGAATTTTTCAATACACATGGTGACTTGAGGCACATAAGCAATTTGAGATTCTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGTTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCGTGGTTGAGTGCAGGTCCTCGTACTCTTCAGCCCTCAATAAATTCCGCTCAACCTGATGCCGTCAATGAGGAATTGTCTGAAAGAAGGAAAAGGGAAGCTGCTGAAAAAGACTTGATATCCATGGAATTGTTGGATGGGGCATTATATGCAATGCAGGTCAGACAAGAAGCTTCTGACTTGGGAAGCTCTTCCTGGGGCAAACTCTAA 1746 0.4318 MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYVVQSKLGWGHFSTVWLAWDTLISVPPFFNSVPLVNEAVKGEMDHLGWSWERIPWTFKGTDYVRVLKYALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYTDYRGVPLHMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLQSLINASKDPRKSGASLILPNTKGKAASNNGTHQDNKILNGDPLKNQKKKVKRKAKVAQGFVGTETSEEAEDYKGPEQEDCGNDVKSSVESVEDKPDSSLSKDESTKNFEKDAAQGSHSHMSSSRLMKKKLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELVGKMPPKIALGGRYSREFFNTHGDLRHISNLRFWPMDKVLMDKYNFSEQDTKDMVDFLVPILDFVPEKRPTAAQCLSHPWLSAGPRTLQPSINSAQPDAVNEELSERRKREAAEKDLISMELLDGALYAMQVRQEASDLGSSSWGKL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01816 581 MobiDBLite consensus disorder prediction 238 257 - -
Vimu5g01816 581 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 7 56 - -
Vimu5g01816 581 SMART serkin_6 36 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01816 581 Gene3D Phosphorylase Kinase; domain 1 78 159 - -
Vimu5g01816 581 Gene3D Phosphorylase Kinase; domain 1 12 68 - -
Vimu5g01816 581 ProSiteProfiles Protein kinase domain profile. 36 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01816 581 MobiDBLite consensus disorder prediction 226 338 - -
Vimu5g01816 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vimu5g01816 581 SUPERFAMILY Protein kinase-like (PK-like) 31 524 IPR011009 -
Vimu5g01816 581 MobiDBLite consensus disorder prediction 283 330 - -
Vimu5g01816 581 MobiDBLite consensus disorder prediction 521 546 - -
Vimu5g01816 581 FunFam Serine/threonine-protein kinase SRPK-like protein 345 515 - -
Vimu5g01816 581 Gene3D Transferase(Phosphotransferase) domain 1 160 516 - -
Vimu5g01816 581 Pfam Protein kinase domain 102 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01816 581 Pfam Protein kinase domain 352 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01816 581 CDD STKc_SRPK 25 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01816 Vimu-Chr5 30014778 30018462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01816 6 573 EF-hand Containing Proteins AT5G22840 57.340 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vimu5g01816 Pkinase 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01816 K08832 - gmx:100790060 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00707 4 5538367 5541790 Vimu5g01816 5 30014778 30018462 PCT