Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01807 ATGGAGGCGCCCGTAGCGAGACCGAGGGGGCGTCCGAGGAAGAGGAGAAGAAATGATGAAGAGAATGAGAACGAAGCAAAGAAACTGGCGTCCATGGGGACACGACCTCCTGTGGCTTTGTTAGGAAGGTTCGTTTTGAAAAATTTTCCCAGGAATGGAGTGTTCCTAGGCAAAGTAGTGTACTATGAAAGCGGTCTTTATAGAGTTTGTTACGAGGATGGCGATTCAGAGGACCTTGACAGCGGTGAGGTCCGCTCTATACTAGTAAAAGAGGGTGAAATTAATGGTGATTTGGCGGGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATGGTGGAAAGATCGGAATTGGTTCACAGAAAGGACCAGTTGAATCCATTAAGGAGGAATCTAGGGCTGGAGTTTGTGAATTGAACGATGGTGGATTGATGATTGAAAAAGATGAGGAAGAAGATGATGAGGATGTCAATTCTTTGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGTCTGAGACCCTGCCACCACCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGATCCTTTAGTATACGGTTGTTCCTACAGCCTTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACGAATTCACTACTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGGCAGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCATCAAGATGCCTAAGGTAG 810 0.4704 MEAPVARPRGRPRKRRRNDEENENEAKKLASMGTRPPVALLGRFVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRSILVKEGEINGDLAGRKEKLEELVSKNGGKIGIGSQKGPVESIKEESRAGVCELNDGGLMIEKDEEEDDEDVNSLSDSGTGLGMDSGAESETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLLDAIHLSLMRVLRQHLEFLSSEGSERASRCLR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01807 269 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Vimu5g01807 269 MobiDBLite consensus disorder prediction 1 31 - -
Vimu5g01807 269 MobiDBLite consensus disorder prediction 146 183 - -
Vimu5g01807 269 Pfam DDT domain 196 252 IPR018501 -
Vimu5g01807 269 MobiDBLite consensus disorder prediction 14 28 - -
Vimu5g01807 269 SMART testlast3 195 255 IPR018501 -
Vimu5g01807 269 PANTHER PHD FINGER FAMILY PROTEIN 37 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01807 Vimu-Chr5 29930752 29931561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01807 187 269 PHD Transcription Factor Family AT5G35210 59.036 3.56e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu5g01807 DDT 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01807 - - pvu:PHAVU_011G089300g 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00720 4 5630626 5637546 Vimu5g01807 5 29930752 29931561 PCT