Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01805 ATGGCAGAAACAGCAGGGCGAAGCTTCATACCTCATGTTCTGACTGTGCAAATTGGAGAGAATTTGGTTGAAACGATAATGTCATTTTTTGAGAAAGGCCCGCTATCGGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTGACCATTCGTGAACATGCTGGTTCCAATCATATTACGAGATTTGAGGGTACCTTTGAGATACTGTCATTATCAGGAGCTTGTACCTTCGTTGGTGGTATTAATGGTCCAGTTCGTACAAGTGGATATTTGAGCATTTCAATGGCTAAATCTGATGGAAATGTTTTGGGGGGAATTCTTGAAAGTGCATTGGTAGCAGCTTGCCCTATTCAGCTTATTATGGCCACTTTCAAGCAAAACATCAGCAGTCAATTCAAGAGGAAACAATTGTTAGAATTTTCTAATGGCCCCCTTATACTGGAAAGTCCAAATTCAGAAAGTGGTAAAATGAAAGTTCCAAAGTTGACAGAAGGAGAGAAAAGTTGTTCTTCACCACCAACAGAACTTGTTCCAACAACAGTACCTAATTGTGTAGCAGATAATGTGTTTTCTGCCACACCAAATGGAGTAGCAGATAGTGCTACTAATGTGCACTCTGCATGTGTTATTGGTGTTGATATGGACAACCAGGCACCGCAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGAATTGAATGCAAATGTTATAGAATTCTGA 729 0.4033 MAETAGRSFIPHVLTVQIGENLVETIMSFFEKGPLSVCILSATGAISNVTIREHAGSNHITRFEGTFEILSLSGACTFVGGINGPVRTSGYLSISMAKSDGNVLGGILESALVAACPIQLIMATFKQNISSQFKRKQLLEFSNGPLILESPNSESGKMKVPKLTEGEKSCSSPPTELVPTTVPNCVADNVFSATPNGVADSATNVHSACVIGVDMDNQAPQSASDDSDQKTSAELNANVIEF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01805 242 SUPERFAMILY AF0104/ALDC/Ptd012-like 8 130 - -
Vimu5g01805 242 CDD DUF296 11 125 IPR005175 -
Vimu5g01805 242 Gene3D - 11 142 - -
Vimu5g01805 242 Pfam Plants and Prokaryotes Conserved (PCC) domain 11 126 IPR005175 -
Vimu5g01805 242 MobiDBLite consensus disorder prediction 218 236 - -
Vimu5g01805 242 MobiDBLite consensus disorder prediction 218 242 - -
Vimu5g01805 242 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 216 IPR039605 GO:0003680
Vimu5g01805 242 ProSiteProfiles PPC domain profile profile. 6 146 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01805 Vimu-Chr5 29902707 29904535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01805 4 125 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 47.541 1.24e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01805 - - vun:114168233 353.984