Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01784 ATGGACGCAGAGGATCTAGCCGACGACCTTCACAGTCTCAGCTTCGCTTCCACCACCACCACTACCAAACGCAGCACAAGTTTCAGCTCAGAAACAACCACCGTCACGCCCTCCACCTCCTCCCACTTCCTTCACGCGCCAATCCCCAACGCCAAGCCTCACGCGCCCTCCTCCGACCCCTGCGCCTCTTTCATCCACCGCACGAGGCCCCTCGCCCTCTCGCACCTCCGCTTCACGCGCCGCCTCGGCTCCGGCGACATGAGCGCAGTCTATTTGGCGGAGCCCAAAGAAGAAGGTGGCGGCGCCGTGTTCGCGGCGAAGGTGATGGAGAAGGAGGACTTGGCGAGGAGAAACAAGGAAGGCAGAGCGAAGACAGAAAGGGAAATTCTCGAAATGTTGGATCACCCTTTCTTGCCCACGCTGTACGCGTCCATCCACGCGCCCAAATGGCTCTGCTTCCTAACGCCATTCTGTCCCGGCGGTGACTTGCACGTCCTCCGCCAGCGCTTCCCCAACAAACGCTTCCTCGAATCCGCCGTCAGGTTCTACGCGTCGGAAGTCTTGTTGGCACTTGAATATCTCCACATGTTGGGGATAATCTACCGCGACCTCAAGCCCGAAAACGTCTTGATAAGATCAGACGGCCACATCATGCTCACCGACTTCGATCTCTCACTAAAATGCGACGATTCCACATCAACGGCCCAGATCATCTCCGACCAAAACCCCCTTCCCACGCGCAACGACTGCCACGTGGAAGGCGCGCGCGTGGCGTCCTCCTCCTCGTGCATAATCCCGAACTGCATAGTCCCGACGGCGTCGTGTTTCCAACCAAAACGCAAGCGAAAGAAGAAGCAGAAGCTCCGTAGCGGGCCTGCGTTCGTGGCGGAGCCCATGAACGTTCGGTCGATGTCATTCGTCGGGACCCACGAGTACTTGGCGCCGGAGATCGTGTCCGGTGAGGGCCACGGTAGTCCGGTGGACTGGTGGACTTTGGGGATATTTATGTTCGAACTGTTTTACGGCGTGACACCGTTCAAGGGCATGGACCACGAGCTGACCCTGGCTAACATCGTGGCTCGAGCCCTTGAGTTCCCGAAGGAACCGGCGTGTTCTGGCGCCATGAAGGAGCTTATATCGCAGTTGCTGGTTAAGGACCCCGGCAAGCGTCTAGGGTCCCTGATGGGTGCTTCTGCGATCAAGCAACACTCTTTTTTTGACGGCGTTAATTGGGCGTTGCTGAGGTGTACCACTCCACCCTTTCTTCCCTCACCTAATGCTAAAGCTGTATATGATGATGATCATCATCCTTCCCCTGACATTTTCATTCGAACGGTCCGCGCGATTGAGGAAGCCCTTGAAATCCCACACGCTACGACGATAGCAGCTTCAAGGTCTCGTAGGGCACGCTTCAGGCGCTCGACTCCGCCGCCGTTCGAGCTGGCGACCACTTCAAGCTCCAATTCAATGTGTTCGCTTCCGTGGGAGAATGGTGGAGGCACAAAAAAAGAAGAGAGGATGCAAGCTGGTAAGCGTTTCGGTTTGAGTACGGAACATGTGAAGTTACGGGGTTTGGTGGAGGTGTGTTTCTGGAGAAGACAAACTAAGCTCCAGTGCAAAGGCTTGGTCTCAGATCATTTTGATATTCATCTTAAAAATCTGAGGATAAGAGAGCAAGAATGGAGTGGGGGAAGAGAAGAGGGGGCAGATAAGGCAGATAATTTACCGAGTTGTCCTGCGGCTGCCATCTTCTCGCTCCTCAGCCTCAATTCTGCTCGCTCTACGGACCGGAAGGAGAGAAATGGGGAAAGTATCAAAATGGAGAAAGAATACCTAAAAAAGAGATATTAG 1851 0.5516 MDAEDLADDLHSLSFASTTTTTKRSTSFSSETTTVTPSTSSHFLHAPIPNAKPHAPSSDPCASFIHRTRPLALSHLRFTRRLGSGDMSAVYLAEPKEEGGGAVFAAKVMEKEDLARRNKEGRAKTEREILEMLDHPFLPTLYASIHAPKWLCFLTPFCPGGDLHVLRQRFPNKRFLESAVRFYASEVLLALEYLHMLGIIYRDLKPENVLIRSDGHIMLTDFDLSLKCDDSTSTAQIISDQNPLPTRNDCHVEGARVASSSSCIIPNCIVPTASCFQPKRKRKKKQKLRSGPAFVAEPMNVRSMSFVGTHEYLAPEIVSGEGHGSPVDWWTLGIFMFELFYGVTPFKGMDHELTLANIVARALEFPKEPACSGAMKELISQLLVKDPGKRLGSLMGASAIKQHSFFDGVNWALLRCTTPPFLPSPNAKAVYDDDHHPSPDIFIRTVRAIEEALEIPHATTIAASRSRRARFRRSTPPPFELATTSSSNSMCSLPWENGGGTKKEERMQAGKRFGLSTEHVKLRGLVEVCFWRRQTKLQCKGLVSDHFDIHLKNLRIREQEWSGGREEGADKADNLPSCPAAAIFSLLSLNSARSTDRKERNGESIKMEKEYLKKRY 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01784 616 Gene3D Transferase(Phosphotransferase) domain 1 162 237 - -
Vimu5g01784 616 Gene3D Transferase(Phosphotransferase) domain 1 302 424 - -
Vimu5g01784 616 FunFam serine/threonine-protein kinase D6PK-like 162 229 - -
Vimu5g01784 616 Gene3D Phosphorylase Kinase; domain 1 76 161 - -
Vimu5g01784 616 MobiDBLite consensus disorder prediction 21 60 - -
Vimu5g01784 616 MobiDBLite consensus disorder prediction 21 45 - -
Vimu5g01784 616 SUPERFAMILY Protein kinase-like (PK-like) 56 438 IPR011009 -
Vimu5g01784 616 ProSitePatterns Protein kinases ATP-binding region signature. 82 107 IPR017441 GO:0005524
Vimu5g01784 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vimu5g01784 616 Pfam Protein kinase domain 303 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01784 616 Pfam Protein kinase domain 79 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01784 616 FunFam serine/threonine-protein kinase D6PK-like 301 424 - -
Vimu5g01784 616 PANTHER FLIPPASE KINASE 1-RELATED 22 429 - -
Vimu5g01784 616 MobiDBLite consensus disorder prediction 466 486 - -
Vimu5g01784 616 ProSiteProfiles Protein kinase domain profile. 76 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01784 616 SMART serkin_6 76 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01784 Vimu-Chr5 29606424 29616284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01784 4 437 AGC Kinase Gene Family AT3G44610 64.062 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu5g01784 Pkinase 3.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01784 K08286 - gmx:100811470 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02366 6 20666870 20670502 Vimu5g01784 5 29606424 29616284 ECH
Vimu5g01784 5 29606424 29616284 Vimu5g01784 5 29606424 29616284 ECH