Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01780 ATGATTAATATGAACATGAAGAACGTCAAATCTCCTTGTTCCAATTCACAGTCTCTATCAAACCCTAATTCACGGTGTGATTCTCCAAATCCATCTCACAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACAAGACACCCTGTGTATAGGGGTGTACGCCAAAGAAACGGAAACAGATGGGTGTGTGAAATTAGGGAACCAGTGAAAAAGTCAAGGATCTGGGTAGGCACATACCCTTCTCCTGAAATGGCTGCTAGGGCACACGACGTGGCTGTTTTAGCCCTTAATGGCATCTCTGCTAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTTCCCCTTGCAAAGTCTTCTTCTGCTGCAGATATAAGGGAAGCAGCAAAAGCTGCTACTGTCGATGATACTTTCACGCCAAACACATCTTTTTCTTGTTCCTCTCACGGAAATTCTAGTTTTGAAGAAAATGGGAATGCTGAAGACAGTTTTTTGAACACGAACATGCACAATGATGAGTCTGAAACCGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTGGATAGTATGGCCGAGGGTTTGCTGATTACTCCACCCTCTAGAGCACTGGACTGGGACCATTCTGATTCTGAAATAGACCTTACTTTGTGGAATAACTGA 666 0.4339 MINMNMKNVKSPCSNSQSLSNPNSRCDSPNPSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPVKKSRIWVGTYPSPEMAARAHDVAVLALNGISAKFNFPDSVSLLPLAKSSSAADIREAAKAATVDDTFTPNTSFSCSSHGNSSFEENGNAEDSFLNTNMHNDESETVFFDEEALYNMPGLLDSMAEGLLITPPSRALDWDHSDSEIDLTLWNN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01780 221 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Vimu5g01780 221 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vimu5g01780 221 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vimu5g01780 221 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vimu5g01780 221 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Vimu5g01780 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 220 IPR045277 GO:0003700
Vimu5g01780 221 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vimu5g01780 221 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vimu5g01780 221 MobiDBLite consensus disorder prediction 1 45 - -
Vimu5g01780 221 MobiDBLite consensus disorder prediction 1 28 - -
Vimu5g01780 221 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01780 Vimu-Chr5 29548877 29549542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01780 34 220 AP2-EREBP Transcription Factor Family AT4G25490 47.423 2.93e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu5g01780 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01780 - - gmx:100793751 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01780 5 29548877 29549542 Vimu5g01780 5 29548877 29549542 ECH
Vimu4g00749 4 5881958 5882671 Vimu5g01780 5 29548877 29549542 PCT