Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01778 ATGATGGACGATGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGATTATACTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTCGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAAGAGAGAGGGAACTGACTGAAGGATCCAGGGTAGAAAAGGGCAAGACCTTGTTTAATGGTAATTTGATGGAAATGGTGAGATCTTCCAATGATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAACATATACTACGTTGATTCCACAGAAGCAATATCAAGCAAATCAGAAAATGCATGGGCACGCCAAGTAGTTGAACCTGCTGTGAAGATAGTTAAATCTTTCTTGAGTGAGAATGGAAGCTTGTCATTTGGGACATCAAATGACACAGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACGTATGCAAGGCGTGTGGAGATCGCGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGTGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGGCCAATTTCCTGGTTTCGTGGAACAGAAGGTTGAGTATTCTCAGTGTGAACAGTGA 696 0.4167 MMDDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMYERERELTEGSRVEKGKTLFNGNLMEMVRSSNDTESTILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIYYVDSTEAISSKSENAWARQVVEPAVKIVKSFLSENGSLSFGTSNDTGMKIIQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKGQFPGFVEQKVEYSQCEQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01778 231 Gene3D Classic Zinc Finger 174 219 - -
Vimu5g01778 231 Gene3D - 1 173 IPR027417 -
Vimu5g01778 231 FunFam tRNA dimethylallyltransferase 173 216 - -
Vimu5g01778 231 SUPERFAMILY beta-beta-alpha zinc fingers 167 215 IPR036236 -
Vimu5g01778 231 Pfam IPP transferase 1 105 - -
Vimu5g01778 231 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 151 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01778 Vimu-Chr5 29519879 29524558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01778 1 216 C2H2 Transcription Factor Family AT2G27760 51.142 2.63e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01778 K00791 - gmx:100792690 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01778 5 29519879 29524558 Vimu5g01778 5 29519879 29524558 ECH