Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01774 ATGTTGTTTTGTGTGGGTTTTATGGGGCATTTGACTCTTACTACAATGGATGGCTTTCATGGTGTGGTTGTGGTTCAATTCCCCACACTAACACTTGGGAGATATAAGGTTGATTTGATGGATTTGGAAGGAACGGTTGTAGAGGTTAAATCAAAGGTATCTAATCGCATGAATGGTGTTTCTGAACAAATGAGTGGTAAGAGGAATCTAGGAAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCATTGGCAGATAATACAATTAGTTCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTGGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCCAGAGTCTTTTACCTCAATTCAAGATCTCCAATTTCTGAAGAATTTATGGGTAAACGTGTTAACAAGAATCTTCCTCATGGAAGGCTGAATTATAACTTATATGAGATCTCAATTAGTGAAATTCAATATGGGGAAGTAAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATATTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCTATAATCCAGCTTGGTTGCGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTGCATGAACCATGGAATTTGAGTGAATTGCACATGAAGACTACGACAGAATGTGTTTATCTTGAACAGTCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGACGAGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATTACCGACTTTTCTTGAAAGACAGTTTCATGATGCTTGCCAGGCTTTGTCTATTGAGCCACCTCCGAGGAATGACATTAATTTTAAGGTGGACTATGTCGCACATGTCAAGGATGCTGAAACATTGATGCAAAGAGCAATAAATAGTCACAGGGAAAATCACGTGCCTATGGTTGCTGTCATTGAATGCCCTAATGTTCAATTGGTAAAATTGGGCATCCGTGCTCTTGATGATTTTCCATGCCTGAGTGTTCCTTACAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGTTAAATGAAAGAATTGCTCTCTCAAGATATGCCCATGTACCCCTGGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGAGCATTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGGCGAACAGAACTTTTTTGTTGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAATACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCATGAACATGATTCTGGAGCATTTTCTATGAATGATCAGAATGGTTTTGATGAGTCTACCTCTTGTGCACATGCCTTTCGAGTCCTTAAGCAGTTGATCCAGCGGTGCCTAGCAGATGCAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATCTGTACAGATGGCTTTGCAGGTTTTTACTACATTCTTTAGCCGTTGTTAAACAACCACACAAATGGGCTTATGGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAGCTACTCCACAAGACCACTCAGTTTGGTTTAGTTGGCGGTGTGGGGTTGAAAACCAAACCAAATTGCCTGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATTTGTCTAGAGCTAAAGCTTACTGTGACAGTTTGCTAAGAACTATACAATCTAGGTCATATAACTACGGTGGAATACCAGTAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCAAGCTGGAACATTGCTGAATACTTGCCAAAAAAAGTCCAAGATCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTTCAGGATGGTGACTCCTGTACTCCATCAATAAGCATTGGAGCTGCAGTTGCTTTTGAATCAGAAATAACAGAGTATATCAAAGAACAGATTAGCTCTTACTTTGCGGACAAACTGCTGGGAATTGTTCACGATATTAGTCTTCATATGAAGGGGGTGAGCAAATCAGAAAACAACCAGAGTATATCACCAGGCCCTGAATTACATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCTCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTGTTGAGAAAGAATTTGCTAAAATATGTTGGTGTTAGAGAGTTTGCTCCCGAAGCCGAGTTTCATGATCCTTGTCATTCATTCGTCTTATCCAACGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGACCTGTGCCGGGATTCGGCTTTACTAACTGAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACTGTGAGACAAAGAGAACGACTATACCACCTGCAAGATGTGGTGTGTGTCAAGTGCCATCAGGTGAAAGCTGCACATTTGGCAGAACAATGCGCATGTGCAGGCTCGTTTAGTTGCAAGGAAGATGCAAATGAATTTCGTAGAAAGATGCAGGTTTTCTTTAACATAGCATCTCGTCAGAAATTCCAGCTTCTCCTAGAGTGTACCTCTTGGATTTTAGAACTTAGATAG 2973 0.4067 MLFCVGFMGHLTLTTMDGFHGVVVVQFPTLTLGRYKVDLMDLEGTVVEVKSKVSNRMNGVSEQMSGKRNLGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSPISEEFMGKRVNKNLPHGRLNYNLYEISISEIQYGEVSKKLATLLADPDIEGIYETKVPLEFNAIIQLGCVCKVDKTANKRSLHEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLLPTFLERQFHDACQALSIEPPPRNDINFKVDYVAHVKDAETLMQRAINSHRENHVPMVAVIECPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQTAGKVGMQRCAASVQWLNERIALSRYAHVPLGNFELDWLIFMADIFFSRALRDNQQVLWISDDGLPDLGGINGEQNFFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCRFLLHSLAVVKQPHKWAYGPKSKLHDPALHQLLHKTTQFGLVGGVGLKTKPNCLVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRSYNYGGIPVKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVFIVSQFMYIPWNYAQNQAQIRASFQDGDSCTPSISIGAAVAFESEITEYIKEQISSYFADKLLGIVHDISLHMKGVSKSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVGVREFAPEAEFHDPCHSFVLSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDVVCVKCHQVKAAHLAEQCACAGSFSCKEDANEFRRKMQVFFNIASRQKFQLLLECTSWILELR 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01774 990 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 60 988 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vimu5g01774 990 SMART DUF1744_2 282 681 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vimu5g01774 990 Pfam Domain of unknown function (DUF1744) 621 674 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vimu5g01774 990 Pfam Domain of unknown function (DUF1744) 300 566 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01774 71 987 Core DNA Replication Machinery Family AT2G27120 51.702 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01774 K02324 - gmx:100778115 1594.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01774 5 29479434 29489027 Vimu5g01774 5 29479434 29489027 ECH