Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01763 ATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGTCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCTGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCAAATGACATATGTAAGGAGTCAAAGAGGCAGATTGTCAGTGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGCAGAGTTTAGAAAGAAGAATGTTGAAAAGAAAGCGGCAGTGTCAAAGGGAAAGGGAGATGAGCAGAGAAAGAAAAGAAAAATGGAAGCTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGATGAGTCACCTGATAAAGCGGAGGGTTCTGATAAAAGTGAGGGCGAGGAGGACGATGAATAA 462 0.4589 MAEAEELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLEAEFRKKNVEKKAAVSKGKGDEQRKKRKMEAESSDKGEASINDESPDKAEGSDKSEGEEDDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01763 153 Gene3D Histone, subunit A 1 153 IPR009072 GO:0046982
Vimu5g01763 153 FunFam DNA polymerase epsilon subunit 3 1 152 - -
Vimu5g01763 153 MobiDBLite consensus disorder prediction 99 144 - -
Vimu5g01763 153 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 147 - -
Vimu5g01763 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Vimu5g01763 153 MobiDBLite consensus disorder prediction 99 153 - -
Vimu5g01763 153 Coils Coil 58 78 - -
Vimu5g01763 153 SUPERFAMILY Histone-fold 7 126 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01763 7 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 27.778 2.71e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu5g01763 CBFD_NFYB_HMF 1.4e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01763 K02326 - gmx:100306382 221.861