Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01760 ATGGTGCTTATAAAGTGGCTTTTGCAGGTTGAATACTCTCCTCATCTGCAACATCAAGGAAAGAACATTTATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGACACATGTTCCTTCACACTGGAAATGGATCTGGTGATTCTAGTCTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCAGACAAGGCAACACCCAAAACGGTAATGAAACTAATGGGGATTTCAGGGCTTACTTTGTATCATCTGAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGTGACACACAAAATCTCCATAAACCCGGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCCCCTCACTCGAATAACAAAGATTTACACATCGGTGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAACGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGATCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAACTCGGCATTTTTAGAGCTGAAGGAGTTACAAGGATTTAGCACTCATCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGCCTCACATCCTGTGAGGTGTCACAGAAAGAGCAAGAGATACAAAACGGAGGGATGAGCCTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGCTCATAGAGGGTCCTAATCTCAACAACCTACCAAGCACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTTACCCCATTGAGCAGAAGAAGTCCAGGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCACTAGGAAAGAATCAGTTAAATCAGTGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCATACTTTGCTGCACCAAAACTGGACCTAACCACTGAAGACAAGAACAATAGAATGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1218 0.4319 MVLIKWLLQVEYSPHLQHQGKNIYSSSRMPIPSERHMFLHTGNGSGDSSLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNVTHKISINPGAATDERLRENNGTHVNNLNLAPHSNNKDLHIGEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSTHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKELIEGPNLNNLPSTDLKWCDPVKNTFLTPLSRRSPGNLSMSIGLEGETENGSTTRKESVKSVAEKVSQDYGLPSYFAAPKLDLTTEDKNNRMSCKELDLNGFSWN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01760 405 Pfam Myb-like DNA-binding domain 59 110 IPR001005 -
Vimu5g01760 405 FunFam Myb family transcription factor 56 114 - -
Vimu5g01760 405 Pfam MYB-CC type transfactor, LHEQLE motif 161 207 IPR025756 -
Vimu5g01760 405 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Vimu5g01760 405 MobiDBLite consensus disorder prediction 337 358 - -
Vimu5g01760 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 112 IPR006447 GO:0003677
Vimu5g01760 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 114 IPR017930 -
Vimu5g01760 405 Gene3D - 56 114 - -
Vimu5g01760 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 22 291 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01760 Vimu-Chr5 29280810 29283109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01760 89 405 G2-like Transcription Factor Family AT3G04030 50.303 5.99e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu5g01760 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01760 - - gmx:100805237 655.595