Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01755 ATGGCAGATAAAGATGCTTTTTGCTACCCTTATCATGTTCATGATTGCACACCACCACAAGAGAAATTGCCTAATAAAGGGCCTTTTCATTCAGAAATGCCTCCCAAAAATTCTAGGAAAGGAGCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGAGTGTTTATGGGTTGTAGTGGTGCTGGTGGAAGTATATTAAGTTCTGGAGCTGCAATGTTTGACCTGGAGTATGCAAGATGGTTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACAGGGCTGCAGGCACCACTGTCCGACGGCGAGCTAAGGGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAGGGAGTGGCTGCTAAAACAGATGTCTTTCATCTCATCAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTCAAACCATCAGAACTCATCGCAATGTTGAGACAACAGTTGGAGCCCCTAGCTGAGCAGCAAATTATGGGCATATGTGCTCTCCGCCATTCTTCAGTGCAAGCAGAAGACGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTCGTTGACACCATCGCCGGTGGCTCCGTCGCCGATGGCGTGCAACAGATGGTGGCCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTGTTGGCCAGGCTGATAATCTGAGACAACAAACCCTTCATCAGTTATGTCGATTACTGACAGTTCGACAAGCTGCAAGATGTTTTGTCGTGATTGGAGAGTACTATGGTCGTTTAAGAGCCCTAAGTTCTCTTTGGGCATCAAGACCTAGAGAGAGCATGATCAGTGATGATAACTCATGCCAAACAACCACAGAACTGCAGATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1071 0.4734 MADKDAFCYPYHVHDCTPPQEKLPNKGPFHSEMPPKNSRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCSGAGGSILSSGAAMFDLEYARWLEDDHRHMAELRTGLQAPLSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFKPSELIAMLRQQLEPLAEQQIMGICALRHSSVQAEDALTQGLEQLQQSLVDTIAGGSVADGVQQMVAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFVVIGEYYGRLRALSSLWASRPRESMISDDNSCQTTTELQMVQPSQNHFSNF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01755 356 Gene3D - 52 100 - -
Vimu5g01755 356 CDD bZIP_HBP1b-like 53 104 - -
Vimu5g01755 356 SUPERFAMILY Leucine zipper domain 53 96 IPR046347 GO:0003700|GO:0006355
Vimu5g01755 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 56 71 IPR004827 GO:0003700|GO:0006355
Vimu5g01755 356 MobiDBLite consensus disorder prediction 15 54 - -
Vimu5g01755 356 FunFam BZIP family transcription factor 52 101 - -
Vimu5g01755 356 Coils Coil 79 99 - -
Vimu5g01755 356 Pfam bZIP transcription factor 52 94 IPR004827 GO:0003700|GO:0006355
Vimu5g01755 356 ProSiteProfiles DOG1 domain profile. 117 325 IPR025422 GO:0006351|GO:0043565
Vimu5g01755 356 PANTHER TRANSCRIPTION FACTOR TGA9 40 328 - -
Vimu5g01755 356 SMART brlzneu 49 126 IPR004827 GO:0003700|GO:0006355
Vimu5g01755 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 51 95 IPR004827 GO:0003700|GO:0006355
Vimu5g01755 356 Pfam Seed dormancy control 134 209 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01755 Vimu-Chr5 29212481 29217166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01755 34 356 bZIP Transcription Factor Family AT1G08320 72.531 6.07e-178 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g01755 DOG1 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01755 K14431 - gmx:100101904 563.918