Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01743 ATGGAGTGCAATGTGGAGAAGCATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTTCTCTTCTTCTTTTTCCTTCACCCCTCATGAGCTTGTTCATGAAACCATCCAATTCTTGCCCATTTTAACTGAAAAGGCCTCAAAAGATGAAGACCATCATCAAAATTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTTGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGACTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAACCAAGAGAGAAGGTTCTGGATTCCAACTCCAGCACAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGAGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAGAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCACTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGTTCTGATGAAGATGAGATCAATGCTCATCATCATGCATGA 966 0.4317 MECNVEKHKNLYLHAPTFIEWLKPCSSPSYLNSNTISTSSSSFSSSFSFTPHELVHETIQFLPILTEKASKDEDHHQNFEVKEEKLEQVTVALHIGLPDSAKRHHEVVDDDDEKMIFHVKEEEDSSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEINAHHHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01743 321 SMART c2h2final6 203 235 IPR013087 -
Vimu5g01743 321 SMART c2h2final6 156 178 IPR013087 -
Vimu5g01743 321 SMART c2h2final6 240 260 IPR013087 -
Vimu5g01743 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vimu5g01743 321 Gene3D Classic Zinc Finger 198 289 - -
Vimu5g01743 321 SUPERFAMILY beta-beta-alpha zinc fingers 225 260 IPR036236 -
Vimu5g01743 321 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vimu5g01743 321 SUPERFAMILY beta-beta-alpha zinc fingers 147 179 IPR036236 -
Vimu5g01743 321 FunFam Zinc finger protein WIP2 209 291 - -
Vimu5g01743 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
Vimu5g01743 321 Gene3D Classic Zinc Finger 155 178 - -
Vimu5g01743 321 PANTHER ZINC FINGER PROTEIN WIP2 19 311 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01743 Vimu-Chr5 29145360 29148041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01743 4 308 C2H2 Transcription Factor Family AT1G08290 56.433 1.21e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g01743 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01743 - - gmx:100802773 595.504