Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g01733 | ATGTCTTGCCCCCATATAACAGCAGTTGCAGCAAATATAAAATCTCACCACCCACACTGGTGTCCTGCAGCCATAAAGTCTGCAATAATGACAACAGCCACAGTTATGGATAACACACATCACCTCATAGGAAGAGATCCAAAGGGTACTGAAACCACACCATTTGACTATGGATCCGGACATGTTAACCCAGTTGCATCACTGAATCCGGGATTAGTATATGAATTTAACTCCGAAGATGTTCTGAATTTTCTGTGCAGCAATGGAGCAAGCCCAGCACAACTTAAAAACCTCACTGGGGATCTTACTCAATGCCAAAAGACTCTCACAGCTTCCTACAACTTCAATTATCCTTCAATTGGTGTGTCAAATATGAATGGAAGTTTATCAGTTTATCGTACGGTTACTTATTATGGTTTGGAGCCAACAGTGTATTATGCAAGTGTTGAAAATCCATCTGGTGTGAATGTTAGAGTTGCTCCAGCAGAATTGAAGTTCTGGAAAACTGGGGAGAGAAAAAGTTTCAGAATTGATTTCTTTCCTTTCAGGAATAGCAATGGAAACTTTGTGTTTGGTGCTTTGACATGGAACAATGGCACACAAAGG | 606 | 0.4076 | MSCPHITAVAANIKSHHPHWCPAAIKSAIMTTATVMDNTHHLIGRDPKGTETTPFDYGSGHVNPVASLNPGLVYEFNSEDVLNFLCSNGASPAQLKNLTGDLTQCQKTLTASYNFNYPSIGVSNMNGSLSVYRTVTYYGLEPTVYYASVENPSGVNVRVAPAELKFWKTGERKSFRIDFFPFRNSNGNFVFGALTWNNGTQR | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01733 | 202 | Gene3D | Peptidase S8/S53 domain | 1 | 80 | IPR036852 | GO:0004252|GO:0006508 | |
| Vimu5g01733 | 202 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 1 | 68 | - | - | |
| Vimu5g01733 | 202 | Gene3D | - | 85 | 202 | - | - | |
| Vimu5g01733 | 202 | Pfam | Subtilase family | 1 | 39 | IPR000209 | GO:0006508|GO:0008236 | |
| Vimu5g01733 | 202 | Pfam | Fibronectin type-III domain | 114 | 201 | IPR041469 | - | |
| Vimu5g01733 | 202 | SUPERFAMILY | Subtilisin-like | 1 | 69 | IPR036852 | GO:0004252|GO:0006508 | |
| Vimu5g01733 | 202 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 1 | 197 | IPR045051 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g01733 | Vimu-Chr5 | 29099695 | 29100409 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01733 | 1 | 202 | Subtilisin-like Serine Gene Family | AT2G04160 | 43.137 | 3.50e-48 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g01733 | - | - | pvu:PHAVU_011G092600g | 353.984 |