Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01730 ATGTCACGTTACAGAGGACCTCGTTTCAAAAAAATACGTCGTCTAGGATATTTACCAGGACTTACTAGTAAAAAGCCAACAGTCAAAAACGAATTTAGAAATCAATCGCGCTTCAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGCTAAAGGATCAACTGGTCAGGTTTTATTACAACTACTTGAAATGCGCTTGGATAACATACTTTTTCGATTGGGTATGGCTGCGACTATTCCTCAAGCTCGCCAATTTATAAACCATAGACATGTTTTAGTTAATGGTCGTATAGTGGATATACCAAGTTATCGTTGCAAACCTCAAGATATTATTACAGCAAAGGATGAACAAAAATCAAAAACTCTGATTCACAATTATCTTGATTCAGCCCCCCATGAGAAATTGCCAAATCATTTGACTGTTCACCCTTTCCAATATAAAGGTTTAATTAATCAAATAATAGATAATAAATGGGTTGGTTTGAAAATAAATGAATTACTGGTTGTAGAATATTATTCTCGTCAAACTTAA 558 0.3297 MSRYRGPRFKKIRRLGYLPGLTSKKPTVKNEFRNQSRFSKKSQYRIRLEEKQKLRFHYAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRHVLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIHNYLDSAPHEKLPNHLTVHPFQYKGLINQIIDNKWVGLKINELLVVEYYSRQT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01730 185 SUPERFAMILY Alpha-L RNA-binding motif 3 183 - -
Vimu5g01730 185 ProSitePatterns Ribosomal protein S4 signature. 71 95 IPR018079 GO:0019843
Vimu5g01730 185 Gene3D - 72 168 IPR036986 GO:0003723
Vimu5g01730 185 CDD S4 73 133 - -
Vimu5g01730 185 Pfam S4 domain 73 120 IPR002942 GO:0003723
Vimu5g01730 185 Hamap 30S ribosomal protein S4 [rpsD]. 1 183 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vimu5g01730 185 PANTHER 30S 40S RIBOSOMAL PROTEIN 44 155 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vimu5g01730 185 SMART s4_6 73 136 IPR002942 GO:0003723
Vimu5g01730 185 SMART Ribosomal_S4_2 3 72 IPR001912 GO:0019843
Vimu5g01730 185 Pfam Ribosomal protein S4/S9 N-terminal domain 3 58 IPR001912 GO:0019843
Vimu5g01730 185 ProSiteProfiles S4 RNA-binding domain profile. 73 135 - -
Vimu5g01730 185 FunFam 30S ribosomal protein S4, chloroplastic 72 168 - -
Vimu5g01730 185 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01730 Vimu-Chr5 29022494 29023099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01730 70 112 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 5.29e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01730 K02986 - gmx:3989263 342.043