Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01716 ATGCCAAACATCATGGAAGATCATCCACCTGGTTTTCGCTTCTTCCCAACAGAAGAAGAGCTTGTCGGCTTCTACCTACGCAACAAGCTAGAAGCTTCAAGAAATAATGCTGCTGCTGTTACTGCTGCCATAGATAGAGTTATTCCAGTTGTTGATATCAATGCCCTGGAACCATGGAACCTCCCAACACTTGCGGGGGAGCTTTGTCGTGGGGATACAGAGCAATGGTTTTTCTTTTCGCCTGGGCAAGAGAGAGAAGCCAGAGGAGGGAGACCTAGCAGAACCACAGCTTCTGGCTACTGGAAAGCTACTGGTTCACCTGGCTATGTTTATTCTTCTGATAACAGAGTCATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGAAAAGCTCCTATGGGAAGAAAAACCAAATGGAAGATGAACGAGTACAGAGCCATCTCCAACCCTGTCACCCCTCAGTTGAGATGCGAATTCAGCTTATATCGGGTGTATATCGTATCTGGAAGCTTTCGAGCATTTGATCGACGTCCATCGGAGACAGAAGGAACAGAGTCACGCCTTCGTCAAAGTTCATCTCAGCTTTCTCAGCTCCCAGAAGCTGGAGATTCAAGCAGCAGAAATTGGAACGAGGAGCAGCTTCAAGAAGCGTCATGGGAATTGGAATGGGAACACTTCAATTGGGTCTAA 690 0.4696 MPNIMEDHPPGFRFFPTEEELVGFYLRNKLEASRNNAAAVTAAIDRVIPVVDINALEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAISNPVTPQLRCEFSLYRVYIVSGSFRAFDRRPSETEGTESRLRQSSSQLSQLPEAGDSSSRNWNEEQLQEASWELEWEHFNWV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01716 229 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 187 - -
Vimu5g01716 229 Pfam No apical meristem (NAM) protein 9 145 IPR003441 GO:0003677|GO:0006355
Vimu5g01716 229 MobiDBLite consensus disorder prediction 185 209 - -
Vimu5g01716 229 Gene3D NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Vimu5g01716 229 MobiDBLite consensus disorder prediction 176 209 - -
Vimu5g01716 229 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
Vimu5g01716 229 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01716 Vimu-Chr5 28832928 28833816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01716 11 228 NAC Transcription Factor Family AT5G22380 54.894 6.54e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g01716 NAM 6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01716 - - gmx:100781321 347.051