Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01689 ATGTCTTCCACAAAGAAAAGTCTTCTCAGAACCGTGTTCACAGCAAACGGAAGCTGTGGTTGCAGCAAATCAAAATCCTCTGAAGTTCATGAACCAACCCCAAAGCCCAAAACCTCCAACAACACTCACCAAAAGCCCAACAACCTCAGCAGCATGGCCTCTTCCACCACTTCAATGGAACACGTAGATGAAGAAGAGTTCACCTCCACCACAGTATCCGAATCCGAGACTTTCCATGATCCCAACAACAACACCAACGTTGCACTCAAACGAAGCCCTCTTGTGGACAGTGTGGCCATCGAGAAGGACTCTTCCAACCCGTATCATGATTTCAGACACTCCATGCTCCAAATGATCTTCGAGAAAGAGATCGAGTCAGAGGACGATCTTCAAGATCTTCTTCAGTGCTTTCTTCACCTGAATGCACCGTGTCACCACCACATCATCGTGAAAGCCTTCAACGCCATCTGCGAAGAAGCTTTTCCTCGCAAGGTTGGTACCACTCCGGCTGCATCCGAACCTTCTCCCTCTCGCCGGAGCCCCCTTCGAAAGAGCAAGTGA 561 0.4938 MSSTKKSLLRTVFTANGSCGCSKSKSSEVHEPTPKPKTSNNTHQKPNNLSSMASSTTSMEHVDEEEFTSTTVSESETFHDPNNNTNVALKRSPLVDSVAIEKDSSNPYHDFRHSMLQMIFEKEIESEDDLQDLLQCFLHLNAPCHHHIIVKAFNAICEEAFPRKVGTTPAASEPSPSRRSPLRKSK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01689 186 MobiDBLite consensus disorder prediction 16 86 - -
Vimu5g01689 186 MobiDBLite consensus disorder prediction 71 86 - -
Vimu5g01689 186 NCBIfam uncharacterized plant-specific domain TIGR01568 98 157 IPR006458 -
Vimu5g01689 186 ProSiteProfiles OVATE domain profile. 100 159 IPR006458 -
Vimu5g01689 186 Pfam Transcriptional repressor, ovate 104 159 IPR006458 -
Vimu5g01689 186 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 27 160 IPR038933 GO:0045892
Vimu5g01689 186 MobiDBLite consensus disorder prediction 165 186 - -
Vimu5g01689 186 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vimu5g01689 186 MobiDBLite consensus disorder prediction 16 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01689 Vimu-Chr5 28565556 28567075 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu5g01689 Ovate 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01689 - - gmx:102660065 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00811 4 6406714 6407175 Vimu5g01689 5 28565556 28567075 PCT