Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01687 ATGCTTTGGACCAAATATAGATTGTCTATTATGGATTATAAACAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACTCCAGTATCAGGAAAGACAGGGAAGGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCTGGCAATAATCTCACTCCTGCTGGTCCATGTCGATATGACAGCTCTTTAGGTATTATAGCTTTTGGCAGATCATTGTTGATCATCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTAGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCAGCGGTTAGATGAACAAATTAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAACGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGGTATTTTTTTGATGATTCTAAAATCAGTTTCCTCAAGTTTATTGCAATGGCATGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTGCACCCAAACTTCCATCTAGTCCAGATGTTAACAAACATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAGGGCGTAGATGTTCAGGGACCAGATGTTGGGCCTAGTTCAGAGTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCAGATTACTGGCTTTTATCAGACGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGAGAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1311 0.4165 MLWTKYRLSIMDYKQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGIIAFGRSLLIIKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDEQRLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVRYFFDDSKISFLKFIAMACQFEEKFEDINGVDVAPKLPSSPDVNKHQSTVVPEDRGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRENTSTPSHPSNVGEVSSTSKPSGG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01687 436 Gene3D - 172 282 - -
Vimu5g01687 436 FunFam E2F transcription factor 1 86 167 - -
Vimu5g01687 436 Coils Coil 116 136 - -
Vimu5g01687 436 Gene3D - 86 167 IPR036388 -
Vimu5g01687 436 SMART E2F_TDP_2 92 165 IPR003316 GO:0005667|GO:0006355
Vimu5g01687 436 SUPERFAMILY E2F-DP heterodimerization region 179 280 IPR037241 -
Vimu5g01687 436 MobiDBLite consensus disorder prediction 24 63 - -
Vimu5g01687 436 SUPERFAMILY "Winged helix" DNA-binding domain 108 163 IPR036390 -
Vimu5g01687 436 Coils Coil 178 219 - -
Vimu5g01687 436 CDD E2F_DD 176 280 IPR032198 GO:0046983
Vimu5g01687 436 PANTHER TRANSCRIPTION FACTOR E2F 35 401 IPR015633 GO:0000978|GO:0006357
Vimu5g01687 436 Pfam E2F/DP family winged-helix DNA-binding domain 109 165 IPR003316 GO:0005667|GO:0006355
Vimu5g01687 436 MobiDBLite consensus disorder prediction 410 436 - -
Vimu5g01687 436 MobiDBLite consensus disorder prediction 316 353 - -
Vimu5g01687 436 MobiDBLite consensus disorder prediction 35 63 - -
Vimu5g01687 436 Pfam E2F transcription factor CC-MB domain 181 281 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01687 Vimu-Chr5 28553450 28557455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01687 45 435 E2F-DP Transcription Factor Family AT5G22220 56.802 1.38e-138 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu5g01687 E2F_CC-MB 7.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01687 K06620 - gmx:100819817 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01687 5 28553450 28557455 Vimu5g01687 5 28553450 28557455 ECH