Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01678 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGGCGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGACAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGGTATTGTGAAGGTGGAGACATGGCTGAGTTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAAGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTACATTCAAATTTTGTTTTGCATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCCTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATACCGTATGGATTCAAATCTGATATTTGGTCACTGGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTCGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTACCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAACATCGACCAACAGCATCTGAGGTGTTAAAGCATCCTTATTTACAGCCTTATGTGGATCAATACCGTCCAGCTTTCAGACCTCCATCAACCTGTTCTGAAAAATCAATTTCTACTGTCAACTATCCTCGGAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCCAACAGTGACAAAGATAGTTTGATGTCAAATGAGAAAAGCATTGCAACAGCATTACCAAAGTGTGATAACAAAGCCACTGAGATGGATCAAACATCACTCGATGATGATGGTTCAGAGGAAGAAAGTGGCTCTAGAAATGCCAATGACAATACCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTCATAATGCACACCATTCTCCCGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCTTTGAAAGAAGGAAAGGTTAGAGAAGCAACTTCTCCAATGAGAGGCAATCGTGTAAAGTCTGGTGGTGTATCAACACAGAAAATAAGTACTGAGACATTGTCTAAATTGCCTAAGCCTATTTTTATTGCTCCAATTGTGAAACCTATGGTAGAGTCACCAACTGTTGCACTTGCACGGGCAACCCCTGACTCTGCGAAAAGAATGCAGGGGTCACATCAATCAAAGCAACAGTTTCTGATGGTAGAAGCCTCACCAAAACTTAAAGCTAGACGTGATTTGACTCCACCACCTGCACTTGTCAAACAAGTAGATGGAGATGTTGTTCCTCCCAGACCAAGACAAAGGACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCAGCAAATGATACTGGAAAGCTAGGCACAGATAAAATAGTTCAGGAACATGAGATGAGCCCTTCTCAGTTGGCTGACGACAATGTACCACCAAGTATTTCGGGACAGGTTACTAGAGAGCCCCAGAAGGTTCTTGAAAGAAGTTCCAGAGGAATGCAAACAGATAGCAGCAATTCTGCTTCGTCTTCGGTTTCTTTCCGAGGTGAACTTGCTGATGATGCCACAACTTTTATTGACATGAAAGAACAGATGCTTCCTGAACATTCGAATGTAAGCCACATTGGAGGTGTGGAATCATGTCCTGACAGCAGCCCGCTGACTACTTGTGCACATTGTAAGGTGGTTGAAAATGTTCCTGAAGATTCCTGTGAGATTGCCATGAATTTTCACAATACTATGAGCAGTAATGAGAAAGTGAATTCCAGTTTAAGTCAAGATCACCATGTTGAAGATTCTAAGGTAGCACTTGCTTCAGAAAGGGGTCTTCTTAAATCCCAGCCAATTATGTCTACTACTTCTGGCTGTGATGATGGATCTGTTGATCCCTCTGCTGGAGCCACCAATGAAATCAAAGATTTTCAAGATATTACCAAGGAAATTCCTTTGGCCAAGTCTACCAAACACGCATCCCCAAGTTCTGAAGAAAAGTCTGTTCGCACAGAAGTTAGTCCAGAAAGTGAACCCGAAATCCTTATTCAGCCAGCACTTGGATGTAAGTCCCCTGGTGATGACAAATTCACAGTGAGAGAGCGACTGTCACCTGTGGTTGAAACTGTTCCTCTGGTTACCCCTACTAAATTATCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTGCTGCAGAGTCCAGCACCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCTTTTGATGATGTTATCCATGTCATACGCCATAGTAGTTACCGCGTTGGCAGTGATCAGCCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAACATAACGTCACCTTTGACTCTCAAATCTTCAAGTTGCTCTGATGTTACAAGCTTGAAATCTGACCAGTTGGAAACAAAAAACTTAAACACTCCTCCCATCCTTAAATCTTCAAGTTTCTCAGATTCTTCCAGCATGAAATCAAGCAATTCTGATCATCCTGGTCTTAAGGAGCAAGATGTGAGTAACCCTCCTCCTCAAGTTTCAGAACCTGAATCTACTGAGCTCAGTAAAAGTAACACTCCTAGGAATGAAGAGAAACCACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGACAGAGAGCAGAGGCACTTGAAGAACTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATATGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGCACGCTCTTCGTAA 3102 0.4268 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFRPPSTCSEKSISTVNYPRKNMAESQNSNSSNSDKDSLMSNEKSIATALPKCDNKATEMDQTSLDDDGSEEESGSRNANDNTKTAEQEVMKPSHNAHHSPVESKQPKTIRNIMMALKEGKVREATSPMRGNRVKSGGVSTQKISTETLSKLPKPIFIAPIVKPMVESPTVALARATPDSAKRMQGSHQSKQQFLMVEASPKLKARRDLTPPPALVKQVDGDVVPPRPRQRTPPSLLRRPSFSGRMRLAGIDVPNAANDTGKLGTDKIVQEHEMSPSQLADDNVPPSISGQVTREPQKVLERSSRGMQTDSSNSASSSVSFRGELADDATTFIDMKEQMLPEHSNVSHIGGVESCPDSSPLTTCAHCKVVENVPEDSCEIAMNFHNTMSSNEKVNSSLSQDHHVEDSKVALASERGLLKSQPIMSTTSGCDDGSVDPSAGATNEIKDFQDITKEIPLAKSTKHASPSSEEKSVRTEVSPESEPEILIQPALGCKSPGDDKFTVRERLSPVVETVPLVTPTKLSSQKVLQEKGTVLQSPAPERPDTGHLPPAFDDVIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTSLKSDQLETKNLNTPPILKSSSFSDSSSMKSSNSDHPGLKEQDVSNPPPQVSEPESTELSKSNTPRNEEKPPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGARSS 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 693 712 - -
Vimu5g01678 1033 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 735 749 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 546 592 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 949 966 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 278 316 - -
Vimu5g01678 1033 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01678 1033 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 894 948 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 483 514 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 273 378 - -
Vimu5g01678 1033 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vimu5g01678 1033 Coils Coil 970 996 - -
Vimu5g01678 1033 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 894 966 - -
Vimu5g01678 1033 FunFam Serine/threonine-protein kinase Nek5 90 334 - -
Vimu5g01678 1033 CDD STKc_Nek 7 262 - -
Vimu5g01678 1033 SUPERFAMILY Protein kinase-like (PK-like) 4 263 IPR011009 -
Vimu5g01678 1033 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 547 592 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 728 753 - -
Vimu5g01678 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vimu5g01678 1033 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 981 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 803 822 - -
Vimu5g01678 1033 MobiDBLite consensus disorder prediction 362 376 - -
Vimu5g01678 1033 Gene3D Transferase(Phosphotransferase) domain 1 90 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01678 Vimu-Chr5 28493389 28500143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01678 12 338 MAP Kinase Kinase Kinase AT3G06030 28.736 4.32e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu5g01678 Pkinase 7.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01678 K08857 - gmx:100818747 1627.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00815 4 6428273 6435378 Vimu5g01678 5 28493389 28500143 PCT