Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01670 ATGGGGTTTTTGCTCAAAGAGGTTTTGAGGACTCTGTGCTCAAGGAATCGCTGGTCTTATGCCGTGTTTTGGAAGATCGGTTGCAACAATTCCAAGGAGAATCAGGTTGGCTTGTTGGGTTTTTTTTCGGTTGGATGTGATTTTGATGCTCGTACTTTCAAAGAGGGATCTCAAGTGTTTAGATTCTATTTCCGGGGTTGCTTCGTTTTCGAGATAAAGTCCACATCTATGATTTGTTTGTTTGAGTTAACTGAGCATGGTTTACTTGTCAGGCTGTTAATCTGGGAAGATCACTACTATGAACCCTTGCCATCTCCTTTCCCTCCACGTACTGTTGGGATTTCTAATTTTCCATATCGAGACGGGGAAGGGTGCTGGTTTTCTTCTGAGTCTCAACTGGGGATTCAGGAGGAGGACAGAGTCGGTGGATTGATTAACAAAATGATGTTGAATAATTCAGTCAGTATTGCTGGAGAAGGGATGGTTGGACGGGCAACATTTACAGGAAACTATCATTGGATTCTTATGAACAATTTCAGTAGAGATGCATATCCACCAGAGGTATATTCTGAGTTGCATTACCAATTTTCTGCTGGAATGCAGACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAATTTGGTTCTTTATTTCCAATAATGGAAGATATTGGATTTGTGAATGATGTGAAGAACTTGATCTTGCAATTGGGATCTGTACCTGGTGCCCTTCTTTCTGAAGATTATTCAGCAAAAGTTTCTAGTGAAAGACTTGGTGTACCTTTCACTGCTGATACACCTGTCATTACTTCTAAATGCACTCCCTCTGCAGCTAATGGCTCCAACCAACTAACTAATTCTACTATTGCTTCAAGGTCTGTTGCTCCATCACCTCATCCGCCAAGGGGAGAAATAGATAATTACCAGGGTTCTGCATTGACACCTCAAACCTATGACCAAAAGCAAATATTTGATAGCATTTGCCAACCAAAGTCTCATTCAATGGTAAAAACAATGGCCTATACCCAGCAGAAGAAGCCGGTCGTCCATACTGAAGCTAAAGTGATATCGACAAATTTTGATTCATGTATGCAACAGCCTTCTGCATATAATTCCAGATCTGCATTCAATGAATTAGCTGGCTTCAATCAATTAAATCTGAGTTGCAACCTTAACTATATGGAACAACAAACATCAGGTGTTGGAAGACAGAGTCAGGTTAATCCCAACATGAATCCATCAAGTGCCTCAAACATGCCTCAACTGAAAACAGGTGGAGGCAAAATTCTTGAACAGAATCAGAGTTCTGGTGGCGGTTCACTATTTGGAGGAATCCCAATATGTGGTGGGAGTAATCTTTTGAGGACAAATATGATTAATTGCTCTGTTTCAAGTTCTCCCAAAGTACCCACTTCTGAATTTTCTGGAAGTCACAAGATTGAGTTTGGGCTTCAAAATAACAATTCAACAACTGATACTGGGCTCTGTTCTGTGCCTAATTTCTGTAACCAATCAGTTACCAGTCACATGAATCTAGAAAACTCGGCTCCGAAGAACCTTCCCATTGATTTAAAGCATGCTTGTGATGCTTTCGTTTCAACTGATCAAAGGATACATGATGATTTGCTTCATACCGCCCTTAGTATTCCGTCTCTTCATCTTGAGGAGAATGAGCCTATGGGTGATCATATCCCTGGTTTTGTTCAAGATTGCCTCAATAAAGATTTTACTAGTATGGTGAAAATGAATGTTAAGCATGAAGAGACCTATACTCAACCTCCATCAGGGGACGATCTCTTTGATGTTTTAGGCGTGGATTTGAAAAGGAAACTACTCAATGGAAACTGGGATAATTTGCTTGCCAGTGATTCAGAGGCTAATAGAGAGCGTCTAGATAAAAAGGCAACATGCATGAATTTACCCAGTGTACGTCCTGATAACAGCTATTCAGTTAAGGAAGCAACATCAGACAGCGGGATCTTCTCTGGAACGGGCACTGACCACCTCTTAGATGCTGTTGTTTCAAAAGCTCAATCTGCTCCAAAACAGAGTTCTGATGAAATGTCTTGCAGGACAACATTGACAAGGGTTAGTACTGCCTCCGTTTCCTCTCCTGCCTGCAACCAGGTTCTGTCTGATCATGTCCTGAAGGGATTGTTTGATTTTCCCAAGAACGGGGCTAAAAGAGCTGCTGGGGAAACCAGTTCTCTTAGGTCTGGGTGCAGCAAGGATGATGCTGGAAACTGCTCTCAAATGACTTCCATATATGGTTCCAAGCTTAGTTCATGGGTTGAGAATGGTAATAGTGTGAAACGTGAAAGCAGCGTTTCAACTGGATACTCTAAGAGACCAGAAGAAGTTTGCAAATCAAATAGGAAAAGGCTTAAACCTGGAGAGAATCCTAGACCTCGACCTAAAGATCGCCAAATGATTCAAGATCGTGTTAAAGAATTAAGGGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTTAGTAAAGAAGGTGGGTTGCTATTGAAAGACAACTTTGAAGGAGGGGCAACATGGGCATATGAGGTTGGCTCGCAATCAATGGTTTGTCCAATCATTGTTGAGGATCTTAATCCACCTCGTCAGATGCTAGTAGAGGGAGTTATGGAAGCTCGTAATGACAAGATCTGGGCACGCTTTGCAGTTGAGGCCAACAGGGACGTGACGAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACAGTGAAGGGTGGTGCATCTTCATCGAATGCAACTGATAACAACATGATGATGTATCATCATTCTTTCCCACAAGCTACCCAGATAGCAGCAACTGGTAGACCTAGTAGTTTGCAATGA 2961 0.4184 MGFLLKEVLRTLCSRNRWSYAVFWKIGCNNSKENQVGLLGFFSVGCDFDARTFKEGSQVFRFYFRGCFVFEIKSTSMICLFELTEHGLLVRLLIWEDHYYEPLPSPFPPRTVGISNFPYRDGEGCWFSSESQLGIQEEDRVGGLINKMMLNNSVSIAGEGMVGRATFTGNYHWILMNNFSRDAYPPEVYSELHYQFSAGMQTVAVIPVLPHGVVQFGSLFPIMEDIGFVNDVKNLILQLGSVPGALLSEDYSAKVSSERLGVPFTADTPVITSKCTPSAANGSNQLTNSTIASRSVAPSPHPPRGEIDNYQGSALTPQTYDQKQIFDSICQPKSHSMVKTMAYTQQKKPVVHTEAKVISTNFDSCMQQPSAYNSRSAFNELAGFNQLNLSCNLNYMEQQTSGVGRQSQVNPNMNPSSASNMPQLKTGGGKILEQNQSSGGGSLFGGIPICGGSNLLRTNMINCSVSSSPKVPTSEFSGSHKIEFGLQNNNSTTDTGLCSVPNFCNQSVTSHMNLENSAPKNLPIDLKHACDAFVSTDQRIHDDLLHTALSIPSLHLEENEPMGDHIPGFVQDCLNKDFTSMVKMNVKHEETYTQPPSGDDLFDVLGVDLKRKLLNGNWDNLLASDSEANRERLDKKATCMNLPSVRPDNSYSVKEATSDSGIFSGTGTDHLLDAVVSKAQSAPKQSSDEMSCRTTLTRVSTASVSSPACNQVLSDHVLKGLFDFPKNGAKRAAGETSSLRSGCSKDDAGNCSQMTSIYGSKLSSWVENGNSVKRESSVSTGYSKRPEEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNPPRQMLVEGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTVKGGASSSNATDNNMMMYHHSFPQATQIAATGRPSSLQ 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01670 986 CDD bHLH_AtLHW_like 801 870 - -
Vimu5g01670 986 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 911 980 IPR043561 GO:0003700|GO:0006355
Vimu5g01670 986 MobiDBLite consensus disorder prediction 276 296 - -
Vimu5g01670 986 MobiDBLite consensus disorder prediction 276 312 - -
Vimu5g01670 986 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 797 846 IPR011598 GO:0046983
Vimu5g01670 986 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 140 235 IPR025610 -
Vimu5g01670 986 MobiDBLite consensus disorder prediction 787 811 - -
Vimu5g01670 986 MobiDBLite consensus disorder prediction 773 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01670 Vimu-Chr5 28393931 28399294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01670 574 960 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 46.226 2.14e-97 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01670 - - gmx:100786351 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00822 4 6494381 6498104 Vimu5g01670 5 28393931 28399294 PCT