Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01668 ATGTGTGCATCATCATTGTGGCAGGTTTTTGTCGTGCGGTCACGAGAAACTGAATTTTTTGTGACAGACATGGCGACGTACTTTCATGGTAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCAAGCGCAAAACATGCTCCTCGTCAATCCCAATAACGCCAGTAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCACCCACGCGCCTCCACCGCCATCTCCCAACAACCACCGTGACCAACAACACAACCACCATCACCACCTGATTGGGCTTACCATTCCCTCATCAAACATCATCGGATCCAATACCGCCGCCGGAGATCACACTCGCCCATCGTTCCTTGGACAACATGAATTCTCCGGCTTTCACGGCGGTGCTGCTGCGGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATATTCGATCAATCTGCTTCGAATATGGTGACAACAACAAACACCCCATCTGAAAATATAGGGTGTGTTGCTTCCGCTGTCAATCCATCGACCCAGATTGGTTTCCACAGGCCGAATCATTTGTCGCTAAGCCTTTCTTCACAGCAAACACCTTACAGGTCTTTATCCGGGGACGTTCATGCTATATCACCGGCGAGCCTCGGCGGCGATGATATGAGGGGTTTGCAGAACGGGGTTTCTAACATGCATAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAACACAGGAGCTTCTTGACGAAGTTGTGAATGTGGGGAGGGGAATCTCGAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGTGAAGGTTCGAGCTGTGGAGGAGAGAACAATGATGGAGGGAAACAAGGAGGTGAGCTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAGCAGGCTGCGGGTGTTGGAGCGGCAAAGTCTTATACATCCCTTGCGTTAAGGACAATCTCAAAGCAATTTCGGTGTCTGAAAGATGCTATCTCTTCGCAAATCAAGACAGCCAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCAAGACTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCGTTGCAGCAACTAGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACAGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAGGTGAAGCAGGAACCGAACAATGGCTCCCAAGACAATAACACAAATAGATCAAAAGAAAACAAGGAGTTATGGTCAGAAGCTAATGCTGCTACACAAGAATCTGGTGGCATGAGACTTAATCAAATTAATGTTCTCCAATCAAAGGCAGAAAGTTTCAACAATAACCAAACCACTTCCCCAACAGAGATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGTCTCTCCAATCTGGTTTCCATCTTGGGGACATGCAAAGTCCAAACAAACCAAGAAGCACTTCTGAAATGCAAAACTCTCCTGGTAGTATCCTTTCGGTGGACATGGAAATGAAGCCTCATCATGGAGAGACAAACACCAGAGAAGGAACCAACACAAAGTTTGGCATTGAAAACCATGGAGGGGGTTTTGGAGCATTTCCCATGGAAGATATTGGAAGGTTCCATCATGTCACTGAACAACTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACCCTCTCGGGAAATCAGCATGGATTCCTCTCTCCGAATATGCACTTGGGAATGAGAACAACCAATGAAAATGAGTTTTGTGGTGCCATCACCACCCCACCTTCTTCTCATTCAGCCACCAGTTATGATAACATCGACATCCAAAACAGAAAGAGGTTCGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2289 0.4727 MCASSLWQVFVVRSRETEFFVTDMATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHQAQNMLLVNPNNASNTSPTSANALNLGNFTHAPPPPSPNNHRDQQHNHHHHLIGLTIPSSNIIGSNTAAGDHTRPSFLGQHEFSGFHGGAAAATTASTSRSNYNLWGSIFDQSASNMVTTTNTPSENIGCVASAVNPSTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGDDMRGLQNGVSNMHSVVLGSKYLKSTQELLDEVVNVGRGISKGEESMEGAKKEKMKGNIESTSGVGEGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTSLALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNNTNRSKENKELWSEANAATQESGGMRLNQINVLQSKAESFNNNQTTSPTEISNSNSLSTSPMGGGGGGGGGGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPHHGETNTREGTNTKFGIENHGGGFGAFPMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSENLTLSGNQHGFLSPNMHLGMRTTNENEFCGAITTPPSSHSATSYDNIDIQNRKRFAAQLLRDFVA 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01668 762 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 110 528 - -
Vimu5g01668 762 Pfam Homeobox KN domain 461 500 IPR008422 GO:0003677|GO:0006355
Vimu5g01668 762 Pfam Associated with HOX 254 395 IPR006563 -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 282 296 - -
Vimu5g01668 762 FunFam BEL1-like homeodomain protein 9 447 509 - -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 300 314 - -
Vimu5g01668 762 SUPERFAMILY Homeodomain-like 445 510 IPR009057 -
Vimu5g01668 762 ProSiteProfiles 'Homeobox' domain profile. 441 504 IPR001356 GO:0003677
Vimu5g01668 762 MobiDBLite consensus disorder prediction 90 109 - -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 513 550 - -
Vimu5g01668 762 Coils Coil 328 348 - -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 603 625 - -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 566 587 - -
Vimu5g01668 762 SMART HOX_1 444 508 IPR001356 GO:0003677
Vimu5g01668 762 MobiDBLite consensus disorder prediction 282 322 - -
Vimu5g01668 762 MobiDBLite consensus disorder prediction 566 625 - -
Vimu5g01668 762 Gene3D - 447 526 - -
Vimu5g01668 762 CDD homeodomain 444 505 IPR001356 GO:0003677
Vimu5g01668 762 SMART prehox3 249 396 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01668 Vimu-Chr5 28311292 28314870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01668 24 762 Homeobox Transcription Factor Family AT2G35940 41.191 8.96e-130 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu5g01668 POX 7.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01668 - - gmx:100786883 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00826 4 6562416 6566132 Vimu5g01668 5 28311292 28314870 PCT