Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01665 ATGGCAGAAATTGAAATCCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAAGATCCTGTGACTACTGTGACAGGGATTACATATGACAGAGAAAGCATAGAAGAGTGGTTGCGTAAGGCCAACGATTGTGTGTGTCCTGTTACCAAACAACCGCTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTCGAAGGCTTATCCAAGCTTGGTGTTCGGAAAACACTGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTCGAGGCTCCTCATTCTTTTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCTACACAAAGCCAGAGGAACAGAACCTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTCAAACTGATTAACAACAATTTCAAAGATGGAAACACAGACACCAGTTCCGTTGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAACCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCGTTGACTTGGGTTTTGAAGGTTCATTTGGATGACAGCAACAGCAGCATGGTAAACGAAGCATTGCCCCTTTTGAAGTTGACAATCGAGGTTACTGATTCAACCCTTTTGGGAAATTTAAGCTTTGAATTCTTCAAGGAAATGGTGAGAGTATTGAAGAAAATAGAAGTATCTCAGAAAAGTATCAAATCTGCTTTGCATGTGCTTGTACAAACCAGCGTTTTGGGTAGAAACAGAACGAGGATTGTTGAAGCAGGTGCAGTGACAGAACTCATAGAGCTTGAGCTTGAGAAGCCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTGTTGTGCTGACGGAAGAGAACAGTTTCTTAGACATGCTGCGGGCATTGCAGTTGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGAGAGAGCAATTCATGTCTTTTCGGTGATTGCTAAGTTTTCAGCATCAAACGAGGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGGTGCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGATTGCACTCCAAAGTTTGGAACAATTCTCCTTGTATACAACTGTATTTGTTTACTAGGCATCAAAGGTGA 1233 0.4323 MAEIEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEEWLRKANDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSENTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSFGTSLEKLHALATQSQRNRTCMAEAGVAKAMVKLINNNFKDGNTDTSSVEEALRIVHLLWNNHSSMKPLVGESLDFINSLTWVLKVHLDDSNSSMVNEALPLLKLTIEVTDSTLLGNLSFEFFKEMVRVLKKIEVSQKSIKSALHVLVQTSVLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLAHLCCCADGREQFLRHAAGIAVVSKRVLRVSAATDERAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCGAYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01665 410 Gene3D - 114 398 IPR011989 -
Vimu5g01665 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vimu5g01665 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Vimu5g01665 410 SUPERFAMILY RING/U-box 4 85 - -
Vimu5g01665 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Vimu5g01665 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vimu5g01665 410 SUPERFAMILY ARM repeat 116 373 IPR016024 -
Vimu5g01665 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vimu5g01665 410 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01665 Vimu-Chr5 28288737 28290333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01665 3 407 U-box Gene Family AT3G11840 42.058 2.91e-106 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01665 - - gmx:100787426 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00828 4 6605566 6606774 Vimu5g01665 5 28288737 28290333 PCT