Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01662 ATGGATGAGATTGAGGTTCCTGCTCTTTTCCTCTGTCCAGTTTCATTGCAGCTTATGAGAGATCCCGTGACAGTGTGCACAGGAATCACATATGACAGACAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCGACCACAATGCCTGCCTTGGACATGAAACCTTTTCATCTCCAAACCCAACCATTGATCAAACCGAGATTGTCAAACTTCTCTTAGAGTCAAAGAAGTTCCCGGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTCTTGGAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACTGGTATGAGTGAAGCAGCTATAAAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAACGAAGGGATTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGCTTGGAAAGTTCCAATCTCGAAGTTATACAACTTTGCTATTGAAGTCAGCACTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACCCCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACGAGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGGGTTTTAGTCATCGTTGAGCTACTTCTTGACGTGTCTGATAGGAGAGTATGTGAACTCATGTTGATAGCTTTGGAAAAACTATGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAATCATGGAGCTGGAATTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTGAAAATTTTGACCTCCATTTGTAGGTATGCAGCCACCCCAAGAGTTCTTCATGAAATGCTGCTGTTGGGGGCAGTGTCAAAGTTGTGCTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAAGGAGACACTCAAATTGCACTCTCTAGTCTGGAGAAACTCCACATGCATTCCTCTTCCTTTGCTTGCATCTTATCCATGA 1200 0.4325 MDEIEVPALFLCPVSLQLMRDPVTVCTGITYDRQNIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCDHNACLGHETFSSPNPTIDQTEIVKLLLESKKFPEKQLKCLSRLQYIALGSESNKICLESAGAIDFLASTMMINSTGMSEAAIKIMFHLNPSESQLKNLMNNEGIQFVESLLHVLKLGKFQSRSYTTLLLKSALKVASPTQLNNVTPELFVEIIRVLRDQISREASKAALKLLVELCSWGRNKIKAVESGGVLVIVELLLDVSDRRVCELMLIALEKLCGCAEGRAELVNHGAGIAVVAKKILRVSQVASDRGVKILTSICRYAATPRVLHEMLLLGAVSKLCLVLQVEGCFKAKERAKETLKLHSLVWRNSTCIPLPLLASYP 399
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01662 399 CDD RING-Ubox_PUB 7 61 IPR045210 -
Vimu5g01662 399 PANTHER WDSAM1 PROTEIN 3 391 IPR045185 GO:0061630
Vimu5g01662 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vimu5g01662 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vimu5g01662 399 SUPERFAMILY ARM repeat 102 361 IPR016024 -
Vimu5g01662 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Vimu5g01662 399 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vimu5g01662 399 Gene3D - 86 387 IPR011989 -
Vimu5g01662 399 SUPERFAMILY RING/U-box 3 79 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu5g01662 Vimu-Chr5 28244443 28246103 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01662 2 399 U-box Gene Family AT2G35930 51.238 4.25e-143 411
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00829 4 6615444 6617377 Vimu5g01662 5 28244443 28246103 PCT