Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01658 ATGGACGTTGATTCCTCGATGTTGCCGGAGGCCGATCACGATTCCGCGGTGCAGAACCATGCTGAGAGAGACCAATTAAAAGAGTCACAGCCTCCTCCGTCGCCGCCGCCTTTGTCGACGGCAGGTGGATCTCAGGCTCAGTTGCCGTCGCAACAGCAGCCGTCGTCGCCGGTGACGGGGGGTCAGGTGCAGCATAGTCCGGTGGTTGGTCCGAGAATTGCGCCGGCTTACTCAGTGGTGAATGCTATTTTGGAGAAGAAGGAGGATGGGCCGGGACCGCGGTGCGGCCACACGTTGACGGCGGTGGCTGCGGTCGGAGAGGAGGGGACGCCGGGGTACATTGGCCCGAGGCTGATTTTGTTCGGCGGTGCCACTGAGCTTGAAGGGAATTCTGCGGCCTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTATCTGGTGCCACTGCTGATGTCCACTGTTATGATGTCATAACTAATAAATGGTCTAGGATAACTCCCATTGGTGAACCGCCAACACCTAGGGCTGCACATGTGGCAACTGCTGTGGGAACTATGGTAGTTATTCAGGGTGGCATCGGTCCTGCTGGTTTGTTTGCTGAGGATCTTCATGTTCTTGATCTCACTCAGCAAAGACCACGATGGCATAGAGTTGGTGTTCCTGGCCCTGGACCAGGACCACGCTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGTAATTGGAGGCAATGATGCTGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCCAGTGCACGATCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGCTGTGAGTTATCTATTCAGACATTCACTTTGTCATTCTATTGAATTAAATTCTGTAGGAATTTCCTGGTCTGTCTCTACCTGGTTGCCATATAAGGAACATTCTGATGGAGGAGTAAACAGAGGCAAAGATAAGCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCCATTGCTCCTGGTGTCTCACCATCTCCAAGATATCAACATGCAGCGGTATTTGTTAATGCAAGGCTTCATGTGTTTGGTGGGGCTCTTGGGGGAGGACAAATGGTTGAAGATTCATCAAGTGTTGCAGTGTTGGACACCGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCTGCTGGTGGAGATGCATCAGTTGAGTTGACACGGCGTTGTAGGCATGCTGCCGCTGCTATTGGTGACCTGATTTTTATCTATGGTGGTTTGCGTGGGGGGGTCTTGCTGGACGATCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACAGCTGCTGCTTCACATGCAGCAGCTGCAGCTGCATCTAATGTACAAGCTGGACGACTACCTGGACGATATGGTGGATTTGTTGATGATAGGGCAAGGCAAACCATGATTGAAGCAACTCCAGATGGTGCTGTTGTTTTGGGAAATCCAGTTGCCCCCCCTGTAAATGGGGACATACATACTGATATCAGCACTGAAAATGCCTTACTCCCAGGATCTAGGCGAACAAGTAAAGGAGTTGAATATCTAGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATTAGTGCCACACTGGCTGCTGCCAAAGCACGGCAGGTAAATGGGGAAGTTGAATTGCCTGACCGAGATCGTGGGGCTGAGGCAACACCTAGTGGGAAACAAATATATTCCTTGATTAAGCCTGATTCTTCTGCGTCAAATAGCATTCCTCCTGGTGGAGTAAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAGAATGAAGGCAGGCGAGTCAGTTATGGGACTCCTGAAAGTGCAACAGCTGCTAGGAAGTTATTAGATAGGCAGATGTCTATCAATAGTGTACCAAAGAAGGTTGTAGCTCACCTCTTAAAGCCACGAGGTTGGAAACCGCCGGTTCGGCGACAGTTTTTCTTGGACTGCAATGAAATTGCGGATCTTTGTGATAGTGCAGAACGAATATTTTCAAGTGAACCAAGCGTCATACAGCTTAGGGCTCCAATTAAAATATTTGGTGATTTACATGGGCAATTTGGAGATCTCATGCGCCTCTTTGATGAGTATGGCTCACCATCCACGGCTGGTGACATAGCATACATCGACTATCTATTCCTTGGAGATTATGTTGATAGGGGTCAACACAGCCTGGAAACTATTAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCAAACAACGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGATTCCGAATAGAGTGCATCGAGAGGATGGGTGAGAGAGATGGAATTTGGGCATGGCACCGTATAAACCGACTGTTTAACTGGCTTCCTCTGGCAGCACTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCACGTTGAACAAATTGAGAATATTCAGCGTCCAATTACGATGGAAGCAGGATCAATCGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGGCTGCGGCCAAATGCTCGGGGTCCAGGATTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAACGATCTTCAGCTGATTGTTCGGGCTCATGAATGTGTGATGGATGGCTTTGAGCGATTTGCTCAGGGACATTTGATCACACTTTTTTCTGCGACAAACTACTGTGGTACGGCAAATAATGCTGGGGCGATTTTAGTTTTGGGAAGAGATCTTGTTGTGGTTCCTAAATTGATTCATCCATTACCACCTGCAATTTCTTCACCGGAAACTTCACCGGAGCGACACATTGAGGACACATGGATGCAGGAGTTGAATGCCAACAGACCACCAACACCAACTAGAGGCCGTCCTCAAGTAGCAAATGACCGAGGTTCTCTTGCTTGGATATAG 3120 0.4853 MDVDSSMLPEADHDSAVQNHAERDQLKESQPPPSPPPLSTAGGSQAQLPSQQQPSSPVTGGQVQHSPVVGPRIAPAYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATELEGNSAASGTPSSAGNAGIRLSGATADVHCYDVITNKWSRITPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLFAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMVIGGNDAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSAVSYLFRHSLCHSIELNSVGISWSVSTWLPYKEHSDGGVNRGKDKPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVFGGALGGGQMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAIGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTAAASHAAAAAASNVQAGRLPGRYGGFVDDRARQTMIEATPDGAVVLGNPVAPPVNGDIHTDISTENALLPGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQIYSLIKPDSSASNSIPPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVIQLRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSLAWI 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01658 1039 CDD MPP_Bsu1_C 688 990 IPR041758 -
Vimu5g01658 1039 MobiDBLite consensus disorder prediction 40 63 - -
Vimu5g01658 1039 MobiDBLite consensus disorder prediction 1015 1039 - -
Vimu5g01658 1039 Gene3D - 51 316 IPR015915 GO:0005515
Vimu5g01658 1039 PIRSF STPPP_BSU1 329 1039 IPR012391 GO:0004721|GO:0009742
Vimu5g01658 1039 PIRSF STPPP_BSU1 33 298 IPR012391 GO:0004721|GO:0009742
Vimu5g01658 1039 Gene3D - 672 1011 IPR029052 -
Vimu5g01658 1039 SMART pp2a_7 708 992 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 736 763 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 954 970 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 842 868 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 932 952 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 804 828 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 771 798 IPR006186 GO:0016787
Vimu5g01658 1039 PRINTS Serine/threonine phosphatase family signature 872 899 IPR006186 GO:0016787
Vimu5g01658 1039 MobiDBLite consensus disorder prediction 1 68 - -
Vimu5g01658 1039 FunFam Serine/threonine-protein phosphatase 349 492 - -
Vimu5g01658 1039 SUPERFAMILY Metallo-dependent phosphatases 694 999 IPR029052 -
Vimu5g01658 1039 Gene3D - 329 495 IPR015915 GO:0005515
Vimu5g01658 1039 Pfam Calcineurin-like phosphoesterase 736 943 IPR004843 GO:0016787
Vimu5g01658 1039 FunFam Serine/threonine-protein phosphatase 672 1012 - -
Vimu5g01658 1039 Pfam Kelch motif 366 412 IPR011498 GO:0005515
Vimu5g01658 1039 SUPERFAMILY Galactose oxidase, central domain 115 469 IPR011043 -
Vimu5g01658 1039 ProSitePatterns Serine/threonine specific protein phosphatases signature. 805 810 IPR006186 GO:0016787
Vimu5g01658 1039 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01658 Vimu-Chr5 28160210 28179499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01658 700 935 Calmodulin-binding Proteins AT5G63870 29.044 6.63e-26 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01658 5 28160210 28179499 Vimu5g01658 5 28160210 28179499 ECH
Vimu4g00832 4 6657742 6661853 Vimu5g01658 5 28160210 28179499 PCT