Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01654 ATGTTTGGGAGGGCACCAAAGAAGAGCGATAACACACGCTACTACGAAATCCTCGGTGTCTCCAAAAACGCTTCACAGGATGATTTGAAGAAGGCTTACAAGAAAGCTGCCATCAAGAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGTTGGCTCAAGCTTATGAGGTTCTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCCCTTAAGGAAGGAATGGGGGGTGGCGGTGGCCATGATCCATTTGATATCTTTTCATCTTTCTTTGGCGGTGGGAGTCCTTTTGGATCAGGAACTGGTATGAAGGTTTCTATAAGACACCTTGGTCCATCCATGATTCAACAAATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGATAGAGATCGCTGCCCACAATGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAAGTTCTTGAAGTAATTGTGGAAAAGGGGATGCAGAATGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGACACAATTACTGGGGATATTGTCTTTGTGCTTCAGCAGAAGGAGCATCCTAAATTCAGAAGAAAGGCTGAAGATCTTTATGTTGAGCACACCTTGTCCCTCACTGAGGCTTTGTGTGGTTTCCAATTTGTCCTGACCCACTTGGATGGCCGTCAGCTTCTTATCAAATCAAATCCTGGGGAAGTTGTGAAACCTGATTCATACAAGGCTATTAATGACGAGGGGATGCCCATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTATCTTCACTTCACTGTGGAATTCCCAGATTTTCTAAATCCTGATCAGGTTAAGGCTTTGGAAGCGGTTCTGCCCCCAAAGCAGCCTTCTCAGTTAACAGACATGGAGCTGGACGAATGTGAGGAGACCACACTTCATGATGTCAATATGGATGAGGAGTCTAGGAGGAGGCAGCAACAATCTGCTCAGGAAGCATATGAGGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAACAGTAA 1071 0.465 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKAEDLYVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYLHFTVEFPDFLNPDQVKALEAVLPPKQPSQLTDMELDECEETTLHDVNMDEESRRRQQQSAQEAYEEDDDMPGGAQRVQCAQQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01654 356 CDD DnaJ 14 63 IPR001623 -
Vimu5g01654 356 Pfam DnaJ domain 14 71 IPR001623 -
Vimu5g01654 356 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vimu5g01654 356 FunFam dnaJ protein homolog 10 109 - -
Vimu5g01654 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 144 211 IPR008971 GO:0006457|GO:0051082
Vimu5g01654 356 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 106 336 IPR044713 GO:0006457|GO:0030544
Vimu5g01654 356 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vimu5g01654 356 FunFam Chaperone protein dnaJ 3 227 298 - -
Vimu5g01654 356 Gene3D - 153 193 - -
Vimu5g01654 356 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vimu5g01654 356 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vimu5g01654 356 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vimu5g01654 356 SMART dnaj_3 12 66 IPR001623 -
Vimu5g01654 356 ProSiteProfiles Zinc finger CR-type profile. 66 157 IPR001305 GO:0031072|GO:0051082
Vimu5g01654 356 Gene3D - 107 152 - -
Vimu5g01654 356 FunFam Chaperone protein dnaJ 3 153 193 - -
Vimu5g01654 356 FunFam DnaJ subfamily A member 2 103 152 - -
Vimu5g01654 356 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 106 155 IPR036410 -
Vimu5g01654 356 Gene3D DnaJ domain 10 106 IPR036869 -
Vimu5g01654 356 Pfam DnaJ central domain 106 152 IPR001305 GO:0031072|GO:0051082
Vimu5g01654 356 Pfam DnaJ C terminal domain 153 281 IPR002939 -
Vimu5g01654 356 Gene3D - 200 282 - -
Vimu5g01654 356 SUPERFAMILY Chaperone J-domain 8 108 IPR036869 -
Vimu5g01654 356 CDD DnaJ_C 151 284 - -
Vimu5g01654 356 MobiDBLite consensus disorder prediction 316 356 - -
Vimu5g01654 356 CDD DnaJ_zf 112 152 IPR001305 GO:0031072|GO:0051082
Vimu5g01654 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 203 292 IPR008971 GO:0006457|GO:0051082
Vimu5g01654 356 MobiDBLite consensus disorder prediction 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01654 Vimu-Chr5 28132376 28134620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01654 5 73 C2H2 Transcription Factor Family AT1G74250 39.744 7.38e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01654 K09503 - gmx:547558 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01654 5 28132376 28134620 Vimu5g01654 5 28132376 28134620 ECH
Vimu4g00845 4 6760821 6763055 Vimu5g01654 5 28132376 28134620 PCT