Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01650 CCAAGTGATTCTCTCCCCCGTGATCTGCCTATAAATCCACCAAGCACACACTCAAAGGACACAGTCACATATAGATTAAAAATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAACAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACATAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCACCCTTTGAGGCAGTAGAGCATGAACAACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTCAAGGAAAGTTGGAGCAGGGAGAAGGAGGTGAAAAGACCAATGGATTCTACTGA 633 0.4423 PSDSLPRDLPINPPSTHSKDTVTYRLKMSMEMMATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKQHISFEEPSSKELGSSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQGKLEQGEGGEKTNGFY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01650 210 CDD HMG-box_SF 141 177 - -
Vimu5g01650 210 FunFam axial regulator YABBY 5-like 125 183 - -
Vimu5g01650 210 Gene3D High mobility group box domain 126 182 IPR036910 -
Vimu5g01650 210 Pfam YABBY protein 34 187 IPR006780 GO:0007275
Vimu5g01650 210 SUPERFAMILY HMG-box 132 180 IPR036910 -
Vimu5g01650 210 MobiDBLite consensus disorder prediction 84 112 - -
Vimu5g01650 210 PANTHER PROTEIN YABBY 6-RELATED 28 196 IPR006780 GO:0007275
Vimu5g01650 210 MobiDBLite consensus disorder prediction 191 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01650 Vimu-Chr5 28092517 28098647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01650 28 210 C2C2-YABBY Transcription Factor Family AT1G08465 64.894 4.88e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu5g01650 YABBY 2.1e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01650 K25796 - gmx:100500026 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00852 4 6801629 6809557 Vimu5g01650 5 28092517 28098647 PCT