Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01646 ATGGCAAAGAGGTTGATGGATGTTGCAAAGTCTGAAGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGGATGGCAGTAAATCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGACGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAACCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGATGACAATGGGATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGCATCATTGTTGCATGGCCAAAGAGAAATACTTGAACAGTATGTCAATACCATCCTGCTGCCCTCTTTATTTTGGGCTCAGGGGGAGAACATAGTTATCAATGGCACATTCAGCGTGTGGCTGAAAAGCCTTCAGCAGACAAAGTTAACTTACGGACCTTTGAAAACTGGAGCCAGAGTCCCTTCCTTCTATGCTACCCGAGTGACAGAGGCACCCATCTCCAGTGAAACCCATCTTTCACTTCAGAATCAACTTAGCAAGTCATCCCAGTCCGTTGTTGACTTGGTGGATTATGAGTTGCAGTCCATTGTTGATTTGGTTGATTATGATCATGCCACCAACCCATTTTGGCGGGATGAGTTGGTTGACCTGTTTCGATTATCCCTATTCATGGTGGGCTTTTGTGGGTCGTTGTTTATACTGGTCTTTTCATTGAACTCATCTGATTTTGCTTCTAGGTCTGGAGAACGCAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCCAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGACTGACTGAACCCCTACGAACCCTGCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAGCCTAATCCACTAGATGGGATCCAGCCTGCCGTTAAGTCAGCTTTGACGAAAGCCTACAAAGAGCAAAGCAAATCTCGGGTGGTTCGAGTTGCCGACCAAATCACACTTCCTGGTGTAAAGAAGGCCCCTAAAAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCAAAAATGAAGATGACACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGATACAGAAGAGTTGGAAGGCATCACCAAGGGAGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCGAGTTCCAAGAAGGCATCGGCTGGTAGAGGTAAAGGTGCTTCCGCATCTGGGAAGAAGAACCATGCTCTTCGTGTAGTTGATGTTCAGGCTTCATAA 1650 0.4412 MAKRLMDVAKSEGLQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPASLLHGQREILEQYVNTILLPSLFWAQGENIVINGTFSVWLKSLQQTKLTYGPLKTGARVPSFYATRVTEAPISSETHLSLQNQLSKSSQSVVDLVDYELQSIVDLVDYDHATNPFWRDELVDLFRLSLFMVGFCGSLFILVFSLNSSDFASRSGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQPNPLDGIQPAVKSALTKAYKEQSKSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGKNEDDTLDESEEENTSDTEELEGITKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASAGRGKGASASGKKNHALRVVDVQAS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01646 549 Gene3D - 1 66 - -
Vimu5g01646 549 SUPERFAMILY post-AAA+ oligomerization domain-like 67 162 IPR008921 GO:0003677|GO:0006260
Vimu5g01646 549 MobiDBLite consensus disorder prediction 456 549 - -
Vimu5g01646 549 Pfam Replication factor RFC1 C terminal domain 123 163 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vimu5g01646 549 Pfam Replication factor RFC1 C terminal domain 308 426 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vimu5g01646 549 Coils Coil 491 511 - -
Vimu5g01646 549 SUPERFAMILY post-AAA+ oligomerization domain-like 307 340 IPR008921 GO:0003677|GO:0006260
Vimu5g01646 549 CDD HLD_clamp_RFC 1 54 - -
Vimu5g01646 549 Gene3D - 68 165 - -
Vimu5g01646 549 FunFam Replication factor C subunit 1 1 67 - -
Vimu5g01646 549 MobiDBLite consensus disorder prediction 465 482 - -
Vimu5g01646 549 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 1 200 - -
Vimu5g01646 549 MobiDBLite consensus disorder prediction 493 525 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01646 288 508 Core DNA Replication Machinery Family AT5G22010 61.607 4.82e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01646 K10754 - vum:124820559 383.645