Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01642 ATGTTCAACGGCATGATGGATCCCGATTTGATTAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGCTAAAGCATACTCGTCCAGAAGAAATGGCTGAGATTGGTGAAAAGATGGCCAATGCGTCTCCTGATGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAGGAAAGTTCAGTGAAGCTTTGAAGAAGTATACGCTTGCTAAAGAAAACATCAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAGTGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGACGCAACGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATACAAGGAACTAGGTCGACTAAATGATGCTGTTTCTGATCTGAGCAAGGCGCATGAAGTGTCCCCTGATGATGATACAGTTGCAGAGCTTTTAAGGGATACCAAGGAAAAATTGACAATGGGAGGTGGTGAGCAATTGACTAGTGGAGTAGTAATCGAAGAAATAACTGAAGAAGTCGAGGATGTACCTCCTAAAAGCTCTTTGGAACAAACAGCCGTTCAAAAAAAATCTGGTGACACCTCTAAGAGTACAAGATCTAAGCATGTGTTTTTTTATAGGTCATTCCAGAACTTCATTCAAAACACAAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCCCCAGATATGATCAAAACCACCTCTGATGTAATTAGTAAGATGTCACCTGATGAACTGCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCAATTTTTAAGAGGAGGTCCCCCTGATTCTTTTAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGACCTCAAGAAGATGTTTGAAATGGCATCATCACTGAAAGGGAAAGAATCTATTCCATCAGCGGCAGCAGTAGATGAGGTCCAAAGAAATGTTTATCAGTCGAACATCCCATCATCAAGTACTAGTGAAACTAGTCATTTTGGGGAATCAAGTTCTTCTCATAATGTGTTTTCAAATATGAGAAGCGCTTCTCAGTCAAACTTTCCTTCCTCCAGTCCTGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCGGCCATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCGGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAAAGCTCAGAAAGCTGTCTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCAAGAAAGACAAAGAACTGGCTGCTAGGGAAGCCTGGGATGATCTTTGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1698 0.4264 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQGKFSEALKKYTLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYDATNLKALYRRGQAYKELGRLNDAVSDLSKAHEVSPDDDTVAELLRDTKEKLTMGGGEQLTSGVVIEEITEEVEDVPPKSSLEQTAVQKKSGDTSKSTRSKHVFFYRSFQNFIQNTNPATLASLNAGQFKDVSPDMIKTTSDVISKMSPDELQKMLDMASSFQGDNQFLRGGPPDSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDEVQRNVYQSNIPSSSTSETSHFGESSSSHNVFSNMRSASQSNFPSSSPDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQKAVSSMSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAIILHRLGFIGG 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01642 565 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
Vimu5g01642 565 MobiDBLite consensus disorder prediction 256 271 - -
Vimu5g01642 565 MobiDBLite consensus disorder prediction 250 271 - -
Vimu5g01642 565 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 275 341 - -
Vimu5g01642 565 SUPERFAMILY TPR-like 96 225 IPR011990 GO:0005515
Vimu5g01642 565 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vimu5g01642 565 SMART tpr_5 103 136 IPR019734 GO:0005515
Vimu5g01642 565 SMART tpr_5 180 213 IPR019734 GO:0005515
Vimu5g01642 565 SMART tpr_5 146 179 IPR019734 GO:0005515
Vimu5g01642 565 MobiDBLite consensus disorder prediction 414 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01642 Vimu-Chr5 27985344 27989956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01642 89 227 Calmodulin-binding Proteins AT3G25230 37.241 4.50e-17 82.4