Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01633 ATGCGCCGGCCCAACAGGGGCGGTGATTTTCCAGAACGAACGCGTCAATCTCCTCTTCCTAATCTTTTGCCTTCATTCACACCAAATCAACAATATCAGCTACAAAATCATACTAATTCTCCAACACAACAACAACAACAATTTCCTTTCGATACAGGTTGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAATTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTACTCCACACAACAACATGGACACCATCCCCTTCCAAGTCAACCTTAGCCGTTCTCCAAACAATCATCACTCTCCCCCACCACCCCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAACACCAACAACATCAACCACAACGTTTCTTCTTCTGCCTCTAATCATCATCATTCCACCACCCCACCTACGTTGGAATTCAAACTAAACACTGGGCTGAATCTTCTCACTGCCAACACTAGCAGTGATCAGTCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAGAAGAGCTGAGAATAAGCTTGCTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGAGACACGCTTCATCAGGTTAACGTTAATTACGATGCACTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGAAGTTGAAGAACAAGAAGTGATTGGTGGAAAGTCAGAAGAGAAGAAGCAAGGAGAGAGTGGCGGCGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGTCAAGATCGATCAGGATCACCCAACGCAGAAGTGGCCTCGAAGGAATTAGGGAGCAGTATGAATGAGAATGTTAATGATGAAGGGTGTGACAAGGAGAAGAAGGAATATGGTAGAGGGGTTGAAAGTGAGGATAGTCCCTCAGGTCATGCTTTTGCCGGGGATAAAGTTCCAAGGTTCAGTCCTCAAAAGAGTAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTTAAAAATGAAGTGGTTTTTATTAATCCAATATTTGGTACTTGGAATAAACAGGTACAAAGGTGTGCTGAAGATCGAACAGTCTTGAACACAACCTACGAAGGCAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATAATGAATGCAAACTTACTCACAAGAGCACTCCTCCCTTGCTCTTCAAGCATTGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAATCCTCTACAGTTCCCAAGGCACCCAAACCAGTTACAAATTCCCCTCCAAGGTATCCCTCATAATTTTTCAAACTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAATCAATCAAAGTTTTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACATCCATTATTGGTGGTGCTCAGCAGCACAACAACAGTAATAATACTAACAATAATGGCAACATGACACTCAGCAACAGCACTGGCAATGGCAACATCACAAGTAGCACCAACACCAACGAGAAGCAATAA 1968 0.4512 MRRPNRGGDFPERTRQSPLPNLLPSFTPNQQYQLQNHTNSPTQQQQQFPFDTGCGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLTPHNNMDTIPFQVNLSRSPNNHHSPPPPLHNTTEMDFFSDNTNNINHNVSSSASNHHHSTTPPTLEFKLNTGLNLLTANTSSDQSMVDDEISPNSEDRRAENKLAVLQAELERMKRENQKLRDTLHQVNVNYDALQMHFMNLMQQKGEEVEEQEVIGGKSEEKKQGESGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPNAEVASKELGSSMNENVNDEGCDKEKKEYGRGVESEDSPSGHAFAGDKVPRFSPQKSNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVKNEVVFINPIFGTWNKQVQRCAEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSIMNANLLTRALLPCSSSIATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGIPHNFSNSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHNNSNNTNNNGNMTLSNSTGNGNITSSTNTNEKQ 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01633 655 MobiDBLite consensus disorder prediction 312 329 - -
Vimu5g01633 655 MobiDBLite consensus disorder prediction 238 259 - -
Vimu5g01633 655 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 161 628 IPR044810 GO:0003700
Vimu5g01633 655 MobiDBLite consensus disorder prediction 1 27 - -
Vimu5g01633 655 Coils Coil 185 219 - -
Vimu5g01633 655 MobiDBLite consensus disorder prediction 272 354 - -
Vimu5g01633 655 Pfam WRKY DNA -binding domain 378 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu5g01633 655 MobiDBLite consensus disorder prediction 274 311 - -
Vimu5g01633 655 MobiDBLite consensus disorder prediction 238 256 - -
Vimu5g01633 655 MobiDBLite consensus disorder prediction 623 655 - -
Vimu5g01633 655 Gene3D WRKY domain 361 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu5g01633 655 MobiDBLite consensus disorder prediction 569 588 - -
Vimu5g01633 655 SUPERFAMILY WRKY DNA-binding domain 369 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu5g01633 655 SMART WRKY_cls 376 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu5g01633 655 ProSiteProfiles WRKY domain profile. 371 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01633 Vimu-Chr5 27915601 27919099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01633 122 630 WRKY Transcription Factor Family AT1G62300 47.985 5.56e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu5g01633 WRKY 3.9e-16 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01633 5 27915601 27919099 Vimu2g01119 2 7413230 7415576 ECH
Vimu5g01633 5 27915601 27919099 Vimu5g01633 5 27915601 27919099 ECH
Vimu5g01633 5 27915601 27919099 Vimu5g00387 5 3586552 3588211 ECH
Vimu4g00872 4 7029808 7032381 Vimu5g01633 5 27915601 27919099 PCT