Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01632 ATGGGGTGGTGGCAAAGAGGCCACACCATTGGCCGGGGCTCATCAGCCACCGTCTCCACCGCCACCTGCTGCGCCGGTGGCGCTGTCTTTGCCGTGAAGTCCGCGGAGCTGTCTCAATCGGAGTCTTTGAAAAGGGAGCAGAAGATTTTGTCCTCTGTAAGTAGTCCTTATGTGGTTGCTTACAAAGGGTGTGACGTTACGATGGAAAACAACAAGCTCTTGTTCAACCTCTTCATGGAGCACATGCCCTTTGGCACGGTTGCTCAGGCGACTCGCCGGCACGGTGGCCGGCTCGAGGAAGCGGCTATGGCACGCTACACCAGGCAAATTTTGCAGGGGCTAGAGTACTTGCATTTAAAAGAATTGGTGCATTGCGACATCAAGGGTGCTAATATCTTAATCGGTGAAGATGGGGTGAAGATTGGAGACTTGGGGTGTGCTAAGAGTGTGGTGGATTCCGCAGTGGTGATCGGCGGCACGCCGATGTTCATGGCCCCAGAGGTGGCGCGAGGGGAGGAGCAAGGGTGTGCCAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACAGGTGATGCACCGTGGCCTAAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAAGGATTTTTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTTTTGAAGCATCCATTTATTGGAAAATCATATTCCAACAATAAGGAAGTTTTGGAATCTAATTCAAGTTCTCCAACTAGTGTTCTTGAGCCATGCTTTTGGAGCTCTGTGGAAGAGTCAGAAAGTGTTGGCGATTTGATTAACAACCGAAGAAAGTTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGCTACCCTGTTGGGCACAACATGATGATGAAAATTGGATCACGGCCAGAGGCAATGGAGGGAAAGGTTTTAGCAATGGTGGGTCAGGGACAGCTTCTGCTAGTCATGAGTTGTCTCACTAG 1020 0.5078 MGWWQRGHTIGRGSSATVSTATCCAGGAVFAVKSAELSQSESLKREQKILSSVSSPYVVAYKGCDVTMENNKLLFNLFMEHMPFGTVAQATRRHGGRLEEAAMARYTRQILQGLEYLHLKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGDAPWPKVPEIPCFLSEEAKDFLGKCLRRNPQERWKASELLKHPFIGKSYSNNKEVLESNSSSPTSVLEPCFWSSVEESESVGDLINNRRKFELLAAGRVRMLALSSGLPCWAQHDDENWITARGNGGKGFSNGGSGTASASHELSH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01632 339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu5g01632 339 MobiDBLite consensus disorder prediction 316 339 - -
Vimu5g01632 339 Pfam Protein kinase domain 5 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01632 339 ProSiteProfiles Protein kinase domain profile. 4 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01632 339 Gene3D Transferase(Phosphotransferase) domain 1 1 294 - -
Vimu5g01632 339 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Vimu5g01632 339 SMART serkin_6 4 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01632 339 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 273 - -
Vimu5g01632 339 MobiDBLite consensus disorder prediction 321 339 - -
Vimu5g01632 339 CDD STKc_MAPKKK 4 238 - -
Vimu5g01632 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01632 Vimu-Chr5 27872704 27873771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01632 4 318 MAP Kinase Kinase Kinase AT1G05100 46.742 1.17e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu5g01632 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01632 K20716 - gmx:100819665 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01632 5 27872704 27873771 Vimu2g01117 2 7388189 7389821 ECH
Vimu5g01632 5 27872704 27873771 Vimu5g01632 5 27872704 27873771 ECH
Vimu5g01632 5 27872704 27873771 Vimu7g02037 7 18263122 18264339 ECH
Vimu4g00874 4 7052490 7053677 Vimu5g01632 5 27872704 27873771 PCT